Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03188 ATGGGTAGTTGTCTAAGTAAAGGTAAAGACTCAGAGCCAGAGCACAATGGTTATAGATATACTGGGTCTGTTGGTGTGCAAAACCAGAAGACCCATGAACCCTTGGTCAACCAATCAAGGTTACCTGCTAATCAACCTTACCAGTTACCTGAAAAACAAGCTGCATCCACTCAGACAGTGCCTTGGAAGCCTTCTGGTCCTGCCCCAAGTCCAAAACCTGTTAAGCAAGATTCAATCCTTGGGAATCAATTTGAGGATGTGAGACAGTTCTATACACTTGGGAAAGAATTGGGTAGAGGGCAATTTGGGGTAACACATCTATGCACTGAGAATTCAACTGGGATGCTGTATGCTTGCAAGTCAATTTCAAAGAGGAAACTTGTTAGGAAATCTGATAAGGAGGATATAAAGAGGGAGATTCAGATCATGCAGCATTTGAGTGGTCAACCCAACATTGTTGAATTCAAAGGTGCTTATGAGGATAGGCATTCGGTTCATGTTGTGATGGAGTTATGTGCAGGTGGTGAACTTTTTGATAGGATTATTGCAAAGGGGCATTACAGTGAAAGGGCTGCTGCTTCAATATGCAGACAAATTGTTAATGTTGTTCATATCTGCCATTTCATGGGTGTGATGCATAGGGATCTAAAGCCAGAGAATTTCTTGTTATCTAGTAAGGATGAAAATGCACTTCTCAAGGCAACAGATTTTGGCTTGTCAGTTTTCATTGAAGAAGGAAAGGTGTATCGGGATATAGTTGGCAGTGCTTATTATGTTGCTCCAGAAGTTCTACGGCGCAGATGTGGGAAGGAAATAGATATATGGAGTGCAGGAGTAATATTGTATATCTTACTTAGTGGTGTCCCTCCATTTTGGGCTGAGACTGAAAAGGGAATTTTTGATGCCATATTGGAAGGTCATATTGATTTTGAAAGTCAACCATGGCCTCAAATATCAGACAGTGCCAAAGACCTTGTTCGTAAGATGCTCATACAGGATCCAAAGAAACGCATTACTTCTGCTCAGGTTCTAGAGCACCCATGGATTAAAGATGGAAATGCTCCTGACAAGCCAATAGACAGTGCAGTCCTTTCCAGAATGAAGCAATTCAGAGCTATGAATAAACTAAAGAAACTTGCCCTGAAGGTCATTGCTGAGAATATGTCTGCAGAAGAGATCCAAGGGCTGAAGGCAATGTTTACAAATATGGACACTGACAAGAGTGGTACAATCACCTATGAAGAACTAAAGGCAGGATTGCAAAGACTTGGCTCAAAGCTTACAGAGGCTGAAGTGAAGCAGCTTATGGAAGCTGCTGATGTAGATGGAAATGGCTCAATTGACTACATAGAATTCATCACAGCTACAATGCATAGACACAAATTAGAAACAGATGACCGTCTTTACAAGGCCTTCCAATATTTTGATAAAGACAACAGTGGGTATATTACAAGAGATGAACTGGAAACAGCCATGAAAGAATATGGTATGGGTGATGAAGCCACAATCAAGGAAATTATATCTGAAGTTGATACAATTATATCTGAAGTGGATACAGATAATGATGGTAGAATCAACTTTGAAGAATTCTGTGCAATGATGAGGAGTGGAAACCAACCACAAGGCAAGCTATTTTAA 1638 0.4066 MGSCLSKGKDSEPEHNGYRYTGSVGVQNQKTHEPLVNQSRLPANQPYQLPEKQAASTQTVPWKPSGPAPSPKPVKQDSILGNQFEDVRQFYTLGKELGRGQFGVTHLCTENSTGMLYACKSISKRKLVRKSDKEDIKREIQIMQHLSGQPNIVEFKGAYEDRHSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDENALLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRRCGKEIDIWSAGVILYILLSGVPPFWAETEKGIFDAILEGHIDFESQPWPQISDSAKDLVRKMLIQDPKKRITSAQVLEHPWIKDGNAPDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENMSAEEIQGLKAMFTNMDTDKSGTITYEELKAGLQRLGSKLTEAEVKQLMEAADVDGNGSIDYIEFITATMHRHKLETDDRLYKAFQYFDKDNSGYITRDELETAMKEYGMGDEATIKEIISEVDTIISEVDTDNDGRINFEEFCAMMRSGNQPQGKLF. 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03188 545 SUPERFAMILY EF-hand 388 535 IPR011992 -
Seca5g03188 545 ProSiteProfiles EF-hand calcium-binding domain profile. 427 462 IPR002048 GO:0005509
Seca5g03188 545 SMART serkin_6 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03188 545 CDD EFh 470 535 IPR002048 GO:0005509
Seca5g03188 545 CDD EFh_PI-PLC 396 536 - -
Seca5g03188 545 ProSitePatterns EF-hand calcium-binding domain. 518 530 IPR018247 -
Seca5g03188 545 Gene3D - 356 538 - -
Seca5g03188 545 SMART efh_1 467 495 IPR002048 GO:0005509
Seca5g03188 545 SMART efh_1 509 537 IPR002048 GO:0005509
Seca5g03188 545 SMART efh_1 395 423 IPR002048 GO:0005509
Seca5g03188 545 SMART efh_1 431 459 IPR002048 GO:0005509
Seca5g03188 545 Coils Coil 413 433 - -
Seca5g03188 545 ProSitePatterns EF-hand calcium-binding domain. 476 488 IPR018247 -
Seca5g03188 545 CDD STKc_CAMK 90 348 - -
Seca5g03188 545 PANTHER SERINE/THREONINE-PROTEIN KINASE 85 527 - -
Seca5g03188 545 ProSiteProfiles Protein kinase domain profile. 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03188 545 FunFam Calcium-dependent protein kinase 1 356 538 - -
Seca5g03188 545 FunFam calcium-dependent protein kinase 1 177 355 - -
Seca5g03188 545 FunFam Calcium-dependent protein kinase 1 93 176 - -
Seca5g03188 545 ProSitePatterns EF-hand calcium-binding domain. 404 416 IPR018247 -
Seca5g03188 545 MobiDBLite consensus disorder prediction 21 63 - -
Seca5g03188 545 ProSitePatterns EF-hand calcium-binding domain. 440 452 IPR018247 -
Seca5g03188 545 ProSiteProfiles EF-hand calcium-binding domain profile. 391 426 IPR002048 GO:0005509
Seca5g03188 545 Pfam Protein kinase domain 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03188 545 ProSitePatterns Protein kinases ATP-binding region signature. 97 130 IPR017441 GO:0005524
Seca5g03188 545 SUPERFAMILY Protein kinase-like (PK-like) 90 370 IPR011009 -
Seca5g03188 545 ProSiteProfiles EF-hand calcium-binding domain profile. 505 540 IPR002048 GO:0005509
Seca5g03188 545 MobiDBLite consensus disorder prediction 1 77 - -
Seca5g03188 545 Pfam EF-hand domain pair 466 535 IPR002048 GO:0005509
Seca5g03188 545 Pfam EF-hand domain pair 396 456 IPR002048 GO:0005509
Seca5g03188 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Seca5g03188 545 ProSiteProfiles EF-hand calcium-binding domain profile. 463 498 IPR002048 GO:0005509
Seca5g03188 545 Gene3D Phosphorylase Kinase; domain 1 93 176 - -
Seca5g03188 545 Gene3D Transferase(Phosphotransferase) domain 1 177 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03188 Seca-Chr5 87353578 87359452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03188 1 545 EF-hand Containing Proteins AT3G20410 74.729 0.0 826
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca5g03188 Pkinase 2.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03188 K13412 - gmx:100798651 998.038