Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03187 ATGGTTGATTTCGAAATTCAGGTTCCCACCCCTTTTGACCCATTTGCTGAGGCTAAAGAATCGGATGCCCCCGGAACCAAGGAGTATGTGCATATACGAATTCAGCAGAGGAATGGAAAAAAGAGCCTGACTACAGTTCAAGGGCTGAAGAAAGAGTTCAGCTACGAGAAGATCCTTAAGGACCTCAAGAAAGAGTTCTGCTGCAACGGGAATGTTGTGCAGGACAAGGAGCTTGGCAAGATAATCCAACTCCAAGGTGATCAGCGCAAGAACGTTTCTCACTTCCTGGTTCAGGCTGGCCTTGTCAGAAAGGACCAGATCAAGATTCATGGTTTTTAA 339 0.4631 MVDFEIQVPTPFDPFAEAKESDAPGTKEYVHIRIQQRNGKKSLTTVQGLKKEFSYEKILKDLKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSHFLVQAGLVRKDQIKIHGF. 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03187 112 NCBIfam translation initiation factor SUI1 5 112 IPR005874 GO:0003743
Seca5g03187 112 SUPERFAMILY eIF1-like 4 112 IPR036877 GO:0003743|GO:0006413
Seca5g03187 112 CDD eIF1_SUI1 28 111 IPR005874 GO:0003743
Seca5g03187 112 Gene3D - 2 112 - -
Seca5g03187 112 PIRSF Transl_init_SUI1_Euk 1 112 IPR005874 GO:0003743
Seca5g03187 112 FunFam Eukaryotic translation initiation factor SUI1 2 112 - -
Seca5g03187 112 Pfam Translation initiation factor SUI1 27 100 IPR001950 GO:0003743|GO:0006413
Seca5g03187 112 ProSiteProfiles Translation initiation factor SUI1 family profile. 30 100 IPR001950 GO:0003743|GO:0006413
Seca5g03187 112 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 8 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03187 Seca-Chr5 87348095 87348433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03187 1 112 Eukaryotic Initiation Factors Gene Family AT5G54940 82.143 5.73e-68 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03187 K03113 - gmx:100791423 221.09