Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03185 ATGCCCTCAGCTCAGGATCCATTTTACGTTGTCAAGGTCGAGGTTCAAGAATCTATTGATAAGCTGCAATCTACTTTTCATCAATGGGAACGTACTCCTGATGCCGCAGAGCGAGTGAATCTTGCAAAGGAGGTTCTTACTGGATGCGAAAGCATAGTGTGGCAGGTGGATGAATTGGACAAAGCAATTGCTGTGGCATCTAGAGATCCTTCTTGGTATGGCATTGATGAAGCTGAGCTTGAAAGCCGAAGGAGATGGACAAGTAGTGCTCGTACTCAGGTTGGCAAAGTGAAGAAAGCAGTTGAAACTGGAAAGGGGGCAAGTACAACAAGCCATTCTAGTGCAATTGGGATGCACCGAGAACTAATGAGGCTACCGGATTCCCATCAAATTGACACATCCAAACATTATGCTGCCCAAGATAATGATGATTTCATACAATCAGAATCAGATAGACAGATGCTTCTTATAAAGAAGCAGGATGAGGAGTTGGATGAGCTTAGTTTAAGTGTGCAAAGAATCGGAGGTGTTGGACTTACAATACATGAAGAACTCGTTGCACAGGAAAAGATTATAGATGAGCTGGGTAACGAGATGGACAGTACATCAAACCGTCTAGATTTTGTCCAAAAAAAAGTGGGAATGGTTATGAAGAAGGCTAGTGCGAAGGGCCAGATCATGATGATATTGGGTTTGTTGGCCCTGTTCATTTTCCTCTTTATCTTGGTCTTCTTCACCTAG 741 0.4332 MPSAQDPFYVVKVEVQESIDKLQSTFHQWERTPDAAERVNLAKEVLTGCESIVWQVDELDKAIAVASRDPSWYGIDEAELESRRRWTSSARTQVGKVKKAVETGKGASTTSHSSAIGMHRELMRLPDSHQIDTSKHYAAQDNDDFIQSESDRQMLLIKKQDEELDELSLSVQRIGGVGLTIHEELVAQEKIIDELGNEMDSTSNRLDFVQKKVGMVMKKASAKGQIMMILGLLALFIFLFILVFFT. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03185 246 SUPERFAMILY SNARE fusion complex 152 216 - -
Seca5g03185 246 CDD SNARE_NTD_AtSYP61-like 5 102 - -
Seca5g03185 246 FunFam syntaxin-61 isoform X1 157 218 - -
Seca5g03185 246 PANTHER GOLGI SNARE BET1-RELATED 112 243 - -
Seca5g03185 246 Gene3D - 161 225 - -
Seca5g03185 246 Gene3D - 2 104 - -
Seca5g03185 246 Pfam SNARE domain 191 242 IPR000727 -
Seca5g03185 246 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Seca5g03185 246 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 154 216 IPR000727 -
Seca5g03185 246 FunFam Syntaxin 10 3 104 - -
Seca5g03185 246 SUPERFAMILY t-snare proteins 5 101 IPR010989 GO:0016020|GO:0016192
Seca5g03185 246 CDD SNARE_Qc 157 213 - -
Seca5g03185 246 Coils Coil 192 212 - -
Seca5g03185 246 SMART tSNARE_6 149 216 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03185 Seca-Chr5 87332057 87336376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03185 55 246 SNARE and Associated Proteins AT1G28490 70.833 1.93e-94 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03185 K08500 - gmx:100787129 374.785