Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03183 ATGTTTTCCTCCTCCCTCACAAATGGGATTTCCTCAAAACCTCACCTTTCCCATCACCCCCTTCCCTTCTCTCACCAACTTCACCACCAAACCCCTTTCCCTCACCCTCCATCGAGGAAATTCCACTCACCAATCCGCTGCGGCATCCGCGAGCTCCGCCAACGAATCGAAACGGTGAAGAACACTCAGAAGATCACCGAAGCAATGAAGCTGGTAGCCGCCGCCAGAGTCCGGCGAGCCCAAGAAGCCGTCATCAATGGAAGACCCTTCTCTGAGACCCTCGCTGAAGTGTTGCACGACATCAACGAACGCCTCCGAAACGACGACGTCGAGGTTCCTCTTACCAGCATCAGGCCAGTGAAGAAGGTTGCCCTTGTTGTCATCACAGGGGACCGTGGCCTCTGTGGCGGTTTCAACAATGCTGTGGTGAAAAAAGCCGAGACCAGAATCAATGAGTTGAAGAAACTCGGTTTGGGTTGCGTTGTGATCAGTGTTGGCAAAAAGGGTAACTCTTTTTTCACTCGCAGGCCTTTTGTTGAGGTTGATAGGTTTATTGAAGGTGGTGGTTTTCCCACTACAAAGGAAGCTCAAGCTATTGCTGATGATGTTTTTTCACTTTTTGTTAGTGAGGAAGTTGATAAGGTTGAGCTTGTTTATACTAGGTTTGTGTCCTTGGTTAAGTTTGATCCGGTGATTCAAACCTTGTTGCCTTTGTCAAAGAAAGGAGAGGTTTTTGATGTGAATGGGAATTGTGTTGATGCCATGGAGGATGAGTATTTTAGGTTGACTTCTAAGGATGGGAAGTTGGCTGTGGAGAGGGATGTTGTGAGGAGGAAGGAGAGAGATGATGGGTGTGTTCCCCTTATGCAATTTGAGCAAGATCCTGTTCAGATTCTTGATGCTATGATGCCTCTTTATTTGAACAGTCAGATTTTGAGGGGCTTGCAAGAATCACTGGCTAGTGAGCTTGCTGCTAGAATGGGTGCCATGGCTAATGCCACTGATAATGCAACTGAATTGAAGAAGAATCTTTCAATGGCTTACAATAGGGAACGGCAGGCAAAAATCACGGGAGAGATATTGGAGATTGTGGCAGGTGCTGAGGCACTAACACAAATTGATTGA 1125 0.4729 MFSSSLTNGISSKPHLSHHPLPFSHQLHHQTPFPHPPSRKFHSPIRCGIRELRQRIETVKNTQKITEAMKLVAAARVRRAQEAVINGRPFSETLAEVLHDINERLRNDDVEVPLTSIRPVKKVALVVITGDRGLCGGFNNAVVKKAETRINELKKLGLGCVVISVGKKGNSFFTRRPFVEVDRFIEGGGFPTTKEAQAIADDVFSLFVSEEVDKVELVYTRFVSLVKFDPVIQTLLPLSKKGEVFDVNGNCVDAMEDEYFRLTSKDGKLAVERDVVRRKERDDGCVPLMQFEQDPVQILDAMMPLYLNSQILRGLQESLASELAARMGAMANATDNATELKKNLSMAYNRERQAKITGEILEIVAGAEALTQID. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03183 374 Coils Coil 330 350 - -
Seca5g03183 374 PANTHER ATP SYNTHASE GAMMA CHAIN 11 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Seca5g03183 374 FunFam ATP synthase gamma chain, chloroplastic 265 370 - -
Seca5g03183 374 Coils Coil 49 69 - -
Seca5g03183 374 CDD F1-ATPase_gamma 49 367 IPR000131 GO:0015986|GO:0045261|GO:0046933
Seca5g03183 374 Gene3D ATP synthase, gamma subunit, helix hairpin domain 272 370 - -
Seca5g03183 374 Gene3D ATP synthase, gamma subunit, helix hairpin domain 47 115 - -
Seca5g03183 374 MobiDBLite consensus disorder prediction 1 41 - -
Seca5g03183 374 FunFam ATP synthase gamma chain, chloroplastic 47 114 - -
Seca5g03183 374 PRINTS ATP synthase gamma subunit signature 213 230 IPR000131 GO:0015986|GO:0045261|GO:0046933
Seca5g03183 374 PRINTS ATP synthase gamma subunit signature 317 336 IPR000131 GO:0015986|GO:0045261|GO:0046933
Seca5g03183 374 PRINTS ATP synthase gamma subunit signature 120 139 IPR000131 GO:0015986|GO:0045261|GO:0046933
Seca5g03183 374 PRINTS ATP synthase gamma subunit signature 348 369 IPR000131 GO:0015986|GO:0045261|GO:0046933
Seca5g03183 374 FunFam ATP synthase gamma chain, chloroplastic 116 239 - -
Seca5g03183 374 Hamap ATP synthase gamma chain [atpG]. 46 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Seca5g03183 374 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 48 370 IPR035968 GO:0015986|GO:0045261|GO:0046933
Seca5g03183 374 Gene3D - 116 240 - -
Seca5g03183 374 NCBIfam ATP synthase F1 subunit gamma 49 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Seca5g03183 374 ProSitePatterns ATP synthase gamma subunit signature. 356 369 IPR023632 -
Seca5g03183 374 Pfam ATP synthase 49 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03183 Seca-Chr5 87322622 87323746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03183 25 370 Primary Pumps ATPases AT1G15700 72.334 4.25e-179 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03183 K02115 - gmx:100797290 507.679