LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g03183	ATGTTTTCCTCCTCCCTCACAAATGGGATTTCCTCAAAACCTCACCTTTCCCATCACCCCCTTCCCTTCTCTCACCAACTTCACCACCAAACCCCTTTCCCTCACCCTCCATCGAGGAAATTCCACTCACCAATCCGCTGCGGCATCCGCGAGCTCCGCCAACGAATCGAAACGGTGAAGAACACTCAGAAGATCACCGAAGCAATGAAGCTGGTAGCCGCCGCCAGAGTCCGGCGAGCCCAAGAAGCCGTCATCAATGGAAGACCCTTCTCTGAGACCCTCGCTGAAGTGTTGCACGACATCAACGAACGCCTCCGAAACGACGACGTCGAGGTTCCTCTTACCAGCATCAGGCCAGTGAAGAAGGTTGCCCTTGTTGTCATCACAGGGGACCGTGGCCTCTGTGGCGGTTTCAACAATGCTGTGGTGAAAAAAGCCGAGACCAGAATCAATGAGTTGAAGAAACTCGGTTTGGGTTGCGTTGTGATCAGTGTTGGCAAAAAGGGTAACTCTTTTTTCACTCGCAGGCCTTTTGTTGAGGTTGATAGGTTTATTGAAGGTGGTGGTTTTCCCACTACAAAGGAAGCTCAAGCTATTGCTGATGATGTTTTTTCACTTTTTGTTAGTGAGGAAGTTGATAAGGTTGAGCTTGTTTATACTAGGTTTGTGTCCTTGGTTAAGTTTGATCCGGTGATTCAAACCTTGTTGCCTTTGTCAAAGAAAGGAGAGGTTTTTGATGTGAATGGGAATTGTGTTGATGCCATGGAGGATGAGTATTTTAGGTTGACTTCTAAGGATGGGAAGTTGGCTGTGGAGAGGGATGTTGTGAGGAGGAAGGAGAGAGATGATGGGTGTGTTCCCCTTATGCAATTTGAGCAAGATCCTGTTCAGATTCTTGATGCTATGATGCCTCTTTATTTGAACAGTCAGATTTTGAGGGGCTTGCAAGAATCACTGGCTAGTGAGCTTGCTGCTAGAATGGGTGCCATGGCTAATGCCACTGATAATGCAACTGAATTGAAGAAGAATCTTTCAATGGCTTACAATAGGGAACGGCAGGCAAAAATCACGGGAGAGATATTGGAGATTGTGGCAGGTGCTGAGGCACTAACACAAATTGATTGA	1125	0.4729	MFSSSLTNGISSKPHLSHHPLPFSHQLHHQTPFPHPPSRKFHSPIRCGIRELRQRIETVKNTQKITEAMKLVAAARVRRAQEAVINGRPFSETLAEVLHDINERLRNDDVEVPLTSIRPVKKVALVVITGDRGLCGGFNNAVVKKAETRINELKKLGLGCVVISVGKKGNSFFTRRPFVEVDRFIEGGGFPTTKEAQAIADDVFSLFVSEEVDKVELVYTRFVSLVKFDPVIQTLLPLSKKGEVFDVNGNCVDAMEDEYFRLTSKDGKLAVERDVVRRKERDDGCVPLMQFEQDPVQILDAMMPLYLNSQILRGLQESLASELAARMGAMANATDNATELKKNLSMAYNRERQAKITGEILEIVAGAEALTQID.	375

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g03183	374	Coils	Coil	330	350	-	-
	Seca5g03183	374	PANTHER	ATP SYNTHASE GAMMA CHAIN	11	370	IPR000131	GO:0015986\|GO:0045261\|GO:0046933
	Seca5g03183	374	FunFam	ATP synthase gamma chain, chloroplastic	265	370	-	-
	Seca5g03183	374	Coils	Coil	49	69	-	-
	Seca5g03183	374	CDD	F1-ATPase_gamma	49	367	IPR000131	GO:0015986\|GO:0045261\|GO:0046933
	Seca5g03183	374	Gene3D	ATP synthase, gamma subunit, helix hairpin domain	272	370	-	-
	Seca5g03183	374	Gene3D	ATP synthase, gamma subunit, helix hairpin domain	47	115	-	-
	Seca5g03183	374	MobiDBLite	consensus disorder prediction	1	41	-	-
	Seca5g03183	374	FunFam	ATP synthase gamma chain, chloroplastic	47	114	-	-
	Seca5g03183	374	PRINTS	ATP synthase gamma subunit signature	213	230	IPR000131	GO:0015986\|GO:0045261\|GO:0046933

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g03183	Seca-Chr5	87322622	87323746	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g03183	25	370	Primary Pumps ATPases	AT1G15700	72.334	4.25e-179	501

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g03183	K02115		-	gmx:100797290	507.679

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