Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03181 ATGGCAACCGTTAACGATGCAGCAAATGATCAAAACGGGTTACTTGGAATGGTAGGTGGCAATGGTGGTGGTGTTGGCGAGGGTGGTGGTAATGGGGAAGAGGTTCCCCTGAAGAAGGGTCCTTGGACAACCACAGAGGATGGTATTCTGATAGATTATGTGACAAAGCATGGTGAAGGGAACTGGAATGCGGTTCAGAGGAACACAGGGCTGGCTCGTTGTGGCAAGAGTTGTAGGCTCAGATGGGCTAATCATTTACGTCCCAATTTGAAGAAAGGTGCTTTCTCCCCTGAAGAAGAAAAACTCATTGTTGAGCTTCATGCACAATTTGGCAACAAATGGGCTAGAATGGCTGCTTTGTTACCTGGGAGAACAGACAATGAAATCAAGAACTACTGGAACACAAGGATCAAGCGCCGCCAGAGACAGGGTTTACCTCTTTATTCAGATGACCCTGATCATCCCACAACACCAACCACACCCACCACACCTTCCTCAAGCCTCACCCCAACAGGATCAAACCCCAACACTGCCACAAAGTTTGAATTTTTTCATCAAAACCACCACCAACAACACCACCCTCTATCTCCAACTGCACACCATCATCATTCTCCTCTCTCTTCACCACTCCAACATAGAACACCTTCTTATTCTCCTCACACTTTCTTGGACCCTGCACCTTTACCTTTGTCCTCTTCTGCACCTTCCCCTCTCTCCTTCACCTTCCAAAGACCTGCACCAATGCTATGTACCCCACTTCGCTTCAAGCGTTACCGTGCCATTCCTAGCTATAACCTTCAGGTCCCTTCCATGACACCCTGCTCCTCTGCTCTCAGTGATCCTTCTATGACTTCCCATCTTGATGGATTCAGGTTCCCAGTTCAGCTCAACTCAAATTATTCTCAGTTTTTTCCAACCACCCCATTGTTAGAAGGGGTTTCTTCTTCTTCCCCTTCACATTACCAAACCAAGTTGGAGCTCCCTTCAAACCAATTTTCAAGACCAGCCTCAGAGCAAGATATTAATAAGCTTGATATGGAGTTCAATGATCCTGCTTTCCAAACCAGTAGTGGGTTACTAGGGGATCTTCTAATGGAAGCTCAAGCACTGGCATCTGGCCAGAATTCAAAGAAACGAAATTATTTGAGTTTAAATGAAGGAAATGATGTGTTTGATGGATGCCAAAACCTTGAGGACTACCCACTCAGTTCTCTTTACTGGCCTTCTACTCCAGCACCGAAACCAAAGGAAGAAACACCAGACCTGAGCAAATTCATGAATGAGGACTTATCAACACTGCTTACTGTAATGCCTTCTTCCAGCATGCAGGGTCAAGATTGGCAGAATAACAATGCACAAGAAGTCTCCAATGTTCAATCTTCTGGTGGTGTGATGACTGATGACAATTTTGGACTTGATATGAAGCCCATAGCTTCTTTGTTTCCTCTATCCAATACAACAAACCATAATGAAAACACAGGCTGCTACACGTGGGACAATTTACCTGGTCTCTGCTAA 1518 0.4545 MATVNDAANDQNGLLGMVGGNGGGVGEGGGNGEEVPLKKGPWTTTEDGILIDYVTKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGAFSPEEEKLIVELHAQFGNKWARMAALLPGRTDNEIKNYWNTRIKRRQRQGLPLYSDDPDHPTTPTTPTTPSSSLTPTGSNPNTATKFEFFHQNHHQQHHPLSPTAHHHHSPLSSPLQHRTPSYSPHTFLDPAPLPLSSSAPSPLSFTFQRPAPMLCTPLRFKRYRAIPSYNLQVPSMTPCSSALSDPSMTSHLDGFRFPVQLNSNYSQFFPTTPLLEGVSSSSPSHYQTKLELPSNQFSRPASEQDINKLDMEFNDPAFQTSSGLLGDLLMEAQALASGQNSKKRNYLSLNEGNDVFDGCQNLEDYPLSSLYWPSTPAPKPKEETPDLSKFMNEDLSTLLTVMPSSSMQGQDWQNNNAQEVSNVQSSGGVMTDDNFGLDMKPIASLFPLSNTTNHNENTGCYTWDNLPGLC. 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03181 505 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 141 IPR017930 -
Seca5g03181 505 FunFam MYB-related transcription factor 38 91 - -
Seca5g03181 505 Gene3D - 94 140 - -
Seca5g03181 505 ProSiteProfiles Myb-like domain profile. 87 137 IPR001005 -
Seca5g03181 505 Gene3D - 38 91 - -
Seca5g03181 505 SMART sant 91 139 IPR001005 -
Seca5g03181 505 SMART sant 38 88 IPR001005 -
Seca5g03181 505 MobiDBLite consensus disorder prediction 153 184 - -
Seca5g03181 505 MobiDBLite consensus disorder prediction 201 218 - -
Seca5g03181 505 MobiDBLite consensus disorder prediction 140 223 - -
Seca5g03181 505 FunFam Transcription factor GAMYB 94 140 - -
Seca5g03181 505 SUPERFAMILY Homeodomain-like 36 133 IPR009057 -
Seca5g03181 505 ProSiteProfiles Myb-like domain profile. 34 86 IPR001005 -
Seca5g03181 505 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 28 464 - -
Seca5g03181 505 Pfam Myb-like DNA-binding domain 39 86 IPR001005 -
Seca5g03181 505 Pfam Myb-like DNA-binding domain 92 135 IPR001005 -
Seca5g03181 505 MobiDBLite consensus disorder prediction 18 41 - -
Seca5g03181 505 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 86 IPR017930 -
Seca5g03181 505 CDD SANT 41 86 IPR001005 -
Seca5g03181 505 CDD SANT 94 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03181 Seca-Chr5 87310458 87313601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03181 17 505 MYB Transcription Factor Family AT4G26930 37.400 1.95e-76 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca5g03181 Myb_DNA-binding 1.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03181 - - lja:Lj6g3v0869180.1 676.781