Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03145 ATGGAAATTGAAAGTCTGCCAAATTGGTTTGATGAAGAGATGTACCGCACAGAATGTACTAGTGAAGAGAACATTGTCCTTGATGTGATGAAGCACTGGGATGAATTTGAAGAAGAAATGACTAAGATAGATGAATTTGTAGAAGAAATGACTAAGATAGAAGCTGCGATGAAGCACTACGATGAATTTGGTCATGATGGATGCAAAAAGAGTCCCGCCACTGCCAAGGGTTCTAATCAGGAGAGGAAGAAAGTGGTTCGTTGGACAAAAGAGGAGCATGAACGCTTTCTGGTGGGACTTGAGAACTATGGCAAAGGGCATTGGAAAAATATAGCTCGCTATTTTGTAAGGACAAAGACTCCTACCCAAGTGGCAAGCCATGCTCAAAAGTACTTCCTAAGGCAAAAGCTTTCTGGAGGGAAAGATAATAAAAGGAGGTCTAGTATCCATGATATCACCACTGACAATCTTACAGAACCTACAACTAATTCAGGTCAAGACAAGCCTCTTTTGTTCAATGAGTCTCTCATGCCAATTGTGCAACCAGAAGGGATTAATCACCTCATTGAGGAGCCACTCATGGAGGTTTTCAATCCAAATTATGAGTCTCTCATGACAAATGTGCAACCAGAAGGGATTAATCACCTCAATGAGGAGCCACTCATGGAGGTTTTCAATCCAAATTATGAGTCTCTCATGACAAATGTGCAACCAGAAGGGATTAATCACCTCAATGAGGAGCCACTCATGGAGGTTTTCAATCCAAATTATGAGTCTCTCATAACAAATGTGCAACCAGAAGGGATTAGTCACCTCAATGAAGAGCCACTCATGGAGGTTTTCAATCCAAATTATGAGTCTCTCATGACAAATGTGCAACCAGAAGGGATTAATCACCACAATGTGGAGCCACTCATGGAGGTTTTCAATCCAAATTATGATGAAATGTTCATGTTTCCCTCATCTGATATCTATTCCGAGACCCTCAAGTTTCAAGGTCAGCAGGATCTAGACAAATGTCTTTTTCATCATGCTTATGCCCATCAAAATGCTCAAGGTTTCGGAATCACTTCTAATGACTTCAATAAGGACGTTGTTTTTGGGTTTTGGTGA 1113 0.4088 MEIESLPNWFDEEMYRTECTSEENIVLDVMKHWDEFEEEMTKIDEFVEEMTKIEAAMKHYDEFGHDGCKKSPATAKGSNQERKKVVRWTKEEHERFLVGLENYGKGHWKNIARYFVRTKTPTQVASHAQKYFLRQKLSGGKDNKRRSSIHDITTDNLTEPTTNSGQDKPLLFNESLMPIVQPEGINHLIEEPLMEVFNPNYESLMTNVQPEGINHLNEEPLMEVFNPNYESLMTNVQPEGINHLNEEPLMEVFNPNYESLITNVQPEGISHLNEEPLMEVFNPNYESLMTNVQPEGINHHNVEPLMEVFNPNYDEMFMFPSSDIYSETLKFQGQQDLDKCLFHHAYAHQNAQGFGITSNDFNKDVVFGFW. 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03145 370 NCBIfam myb-like DNA-binding domain, SHAQKYF class 83 135 IPR006447 GO:0003677
Seca5g03145 370 Gene3D - 86 137 - -
Seca5g03145 370 FunFam transcription factor MYB1R1 86 137 - -
Seca5g03145 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 136 IPR017930 -
Seca5g03145 370 MobiDBLite consensus disorder prediction 136 168 - -
Seca5g03145 370 ProSiteProfiles Myb-like domain profile. 80 132 IPR001005 -
Seca5g03145 370 ProSiteProfiles SANT domain profile. 87 136 IPR017884 -
Seca5g03145 370 CDD SANT 87 132 IPR001005 -
Seca5g03145 370 SMART sant 84 134 IPR001005 -
Seca5g03145 370 Pfam Myb-like DNA-binding domain 87 132 IPR001005 -
Seca5g03145 370 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 24 230 IPR043363 -
Seca5g03145 370 MobiDBLite consensus disorder prediction 137 152 - -
Seca5g03145 370 MobiDBLite consensus disorder prediction 153 168 - -
Seca5g03145 370 SUPERFAMILY Homeodomain-like 81 136 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03145 Seca-Chr5 86822440 86823833 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca5g03145 Myb_DNA-binding 5.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03145 - - gmx:100783469 181.415