Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03143 ATGGCGAATCTGCCCCAATCTCTCTCAATGAATGCTGCCTTCGGCGGTGGCCCTCCTCCTCCGCCGAGTCCCTCTGCCCAAACCTCCGCCGCCACCAAAGATCGTAAGATGGCATCTGCGGAGCAGCTCGTCCTTGAGCTCAGCAACCCTGACCTCCGTGAAAACGCTCTTCTCGAACTCTCCAAGAAGAGAGAGCTATTTCAAGATCTTGCTCCATTGTTATGGAATTCTTTTGGTACTATTGCTGCACTTTTGCAGGAAATAGTTTCAATATACCCTGTTCTATCACCACCCAATCTTACTCCAGCACAATCAAACCGAGTGTGCAATGCTCTTGCTCTTCTTCAGTGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATGCAATGATTTGTTGTACTTGCCTTTTTTCCTCTGCAGCTCATATACCCCTATATCTGTATCCCTTCCTTAATACAACAAGCAAGTCAAGACCATTTGAGTATTTGAGGCTTACCAGTCTTGGTGTTATTGGTGCATTGGTGAAGGTTGACGATACAGAGGTTATAAGTTTCCTTCTTTCAACAGAGATTATTCCTCTGTGCCTGCGCACCATGGAAATGGGCAGTGAACTGTCAAAAACAGTTGCGACATTTATTGTTCAAAAAATTCTATTGGACGATGTGGGTTTGGATTATATTTGTACTACAGCAGAGCGCTTTTTCGCAGTAGGTCGAGTTTTGGGCAACATGGTGGCAGCTCTTGCTGAGCAACCCTCATCTCGTCTGCTGAAGCATATCATTCGATGCTATCTTCGCCTGTCAGATAATCCAAGGGCTTGTGATGCACTAAGAAGCTGTCTTCCAGACATGTTACGAGATGCTACTTTCAGCAGTTGCCTTCGTGAAGACCCCACAAGTAGGAGGTGGCTACAACAATTGCTTCACAATGTTGGAGTGAATCGGGTTCCTGGACTACAAGCTGGAGGAGGTTTCGATCATATGATGGTGCCCTGA 1002 0.4631 MANLPQSLSMNAAFGGGPPPPPSPSAQTSAATKDRKMASAEQLVLELSNPDLRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAMICCTCLFSSAAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTSRRWLQQLLHNVGVNRVPGLQAGGGFDHMMVP. 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03143 333 MobiDBLite consensus disorder prediction 1 34 - -
Seca5g03143 333 Gene3D - 31 314 IPR011989 -
Seca5g03143 333 Pfam Cell differentiation family, Rcd1-like 43 313 - -
Seca5g03143 333 SUPERFAMILY ARM repeat 48 290 IPR016024 -
Seca5g03143 333 PANTHER UNCHARACTERIZED 32 316 IPR007216 GO:0006402|GO:0030014
Seca5g03143 333 FunFam Cell differentiation protein RCD1 33 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03143 Seca-Chr5 86772636 86779917 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Seca5g03143 Rcd1 7.6e-124 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03143 K12606 - gmx:100784529 575.089