Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03139 ATGGAAGCCACCTGCAATGATGCCTCTAATGCTGCTGCAGTTGAACATTCTTCTCCAGTCATGTCGTTTAATGGGAAACGACTAATCATGGATGAGATGGATTTCTTTCCACACAATAATTCAACTCCAGTTAATGATCAAATCCACCTTCATGTAGATACTAGTTTAGATCTCCTTTCAAAGATTTGTCCTAGCAATAGATCAATTGTGGAAGATGGGGCATCAGAGGCCAGAGATGATAAGAAAGATGAGTTTATAGCTTTGGTAGCTGAATTGCACCACATGAGTGCTGAAAATCAACGTCTGAGAGAGCTGATTGATCGGGTGAACAATGACTACAATGCCCTTCACATGCAGCTTATGAAGCTGATGCAGAAACAGCATACACATGAACAGGATGAGATTAATGAAGGAGCCACAGGGGAGAAGGGTAAGAGAGATGATATGATTCCAAGGCCATTCTTGGACATTGGTTTTGCTGAAAAGGATGAGACTTCACAGCAATATTCTTCAGAAGGAAAACTGAGAGAAAGCAAAAGCATGGTTGACTTGATGGAGTGCAAGACTGATCAGAAGATTTGCACCAGTAGAGATATTGGTCCGTTGGACCTGCCAGAGAAGCTGGATTCTGACTGCAAGGATGGTGCAAAATCCAGAAGGGACCATGAAGAGAGCCCAACTCACAAAGCATTTCCAGGGTCACTCTCTAATGAAGTCACCAGATTGAGTTCTTCTTTCAGGGATAATGTTGATCAAGCTTCAGAAACCATGTCAATGATCAAGAAAGCCCGGGTATCAGTTAGAGCAAGATCAGAATCTTCCATGATTTCAGATGGATGTCAATGGCGAAAGTATGGACAGAAGATGGCCAAAGGGAATCCATGTCCTCGAGCTTATTATCGTTGTACAATGGGGACTGGTTGTCCAGTTCGGAAACAAGTACAGAGGTGTGCTGAAGATAGAAGTGTGCTGGTGACAACATATGAAGGGCAACATAACCATCCACTCCCTCCCACTGCCAAGGCAATGGCATCAACCACATCTGCAGCTGCATCAATGCTTCTTTCAGGATCAATGCCAAGTGCAGATGGCCTAATAAATCCATCCATATTAGAAAGTGCAGCACTTCCTTGCGCACAGAACATGGCAACTCTCTCTGCTTCAGCTCCATTTCCAACTATTACATTGGATCTCACTCAAAGTGCTACCAATTCCTCACAGCCACAAGGGGGACCACAAGGCCAACTCAGCCTCCTTCCCCCACTTTTGGCCCAGAAGTTTATGTCAACTCCAAACATTTTTGGGCAGGGAATGGAGACAGCTTCATTTACAGACACAGTAAATGCAGCAACAGCTGCTATCACTGCAGATCCAAAATTCACAGCAGCTCTTGTGGCTGCCATAACATCTATCATTGGAAGTTCAAATCCAAATAATAATGGTACAAGTGGTGACCAGCAGTGCAATAATACATGA 1476 0.439 MEATCNDASNAAAVEHSSPVMSFNGKRLIMDEMDFFPHNNSTPVNDQIHLHVDTSLDLLSKICPSNRSIVEDGASEARDDKKDEFIALVAELHHMSAENQRLRELIDRVNNDYNALHMQLMKLMQKQHTHEQDEINEGATGEKGKRDDMIPRPFLDIGFAEKDETSQQYSSEGKLRESKSMVDLMECKTDQKICTSRDIGPLDLPEKLDSDCKDGAKSRRDHEESPTHKAFPGSLSNEVTRLSSSFRDNVDQASETMSMIKKARVSVRARSESSMISDGCQWRKYGQKMAKGNPCPRAYYRCTMGTGCPVRKQVQRCAEDRSVLVTTYEGQHNHPLPPTAKAMASTTSAAASMLLSGSMPSADGLINPSILESAALPCAQNMATLSASAPFPTITLDLTQSATNSSQPQGGPQGQLSLLPPLLAQKFMSTPNIFGQGMETASFTDTVNAATAAITADPKFTAALVAAITSIIGSSNPNNNGTSGDQQCNNT. 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03139 491 FunFam probable WRKY transcription factor 31 261 338 - -
Seca5g03139 491 Gene3D WRKY domain 261 338 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca5g03139 491 Coils Coil 92 126 - -
Seca5g03139 491 SMART WRKY_cls 276 336 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca5g03139 491 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 70 481 IPR044810 GO:0003700
Seca5g03139 491 MobiDBLite consensus disorder prediction 202 228 - -
Seca5g03139 491 MobiDBLite consensus disorder prediction 127 151 - -
Seca5g03139 491 SUPERFAMILY WRKY DNA-binding domain 269 337 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca5g03139 491 Pfam WRKY DNA -binding domain 278 335 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca5g03139 491 ProSiteProfiles WRKY domain profile. 271 337 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca5g03139 491 MobiDBLite consensus disorder prediction 196 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03139 Seca-Chr5 86669538 86672850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03139 69 472 WRKY Transcription Factor Family AT4G04450 44.104 1.22e-100 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca5g03139 WRKY 4.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03139 - - gmx:100804246 494.582