Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca5g03136 | ATGGAGGAAGATCAACTCGCTGCCCCAAATCCAATGCCTTTTCCTCCTTACCGTCGATCTCACTTGCGCAGCCAAACTTACCAAACCCTTCTTCGCATCTTCTCCCACCTTTCTGCTTCTACCACTCCTAATCACCCCCTCACTTTTCCTCATGATGGCGGTGGTAGAATGGGGCAAGAAAACCAGGAAAAGGAGCCTGAGTGCTCTGAATTAAAAGTTGATTCTGATTTTATGGATCCCAAGGATCCTGTACCCCAGAAGGAAATACAGGAGGTCCATGAGACCATTCAAGAGGTTGGAGACAAGGGCAAGGATTTTAGTGCCAATAAGACGACACTAGGTGATATAGAACTTCTAATGGGAATAGAGGAAACATCTACACAAGCAAATTGTTTTAATAAAGAACAGAAGCTAATGGATGAATTGCAGCTAGTTGTGAATGGGACTGAAGATCTTGTTTCTGATGATGGTTTAATCCCCTTGAACTCGGGATTAGGTGAGAAACAAAATGGGGGTAGTGAAGTTGATTTGATGGATTACCAAGTAGAACATGTTGAATTTCTGCATTCTGAATTGAATGCATCTGGAAATGCTAGTAAGTTGCAAGTACCAGGAGAGCATAATCAACTTGCCTCGGAAGGCTTTCATCCGTTTTTGATGTTTAACGTGTCCACAACAACAAAGGGACAAGCCTCTTCATCGGTAATTAGTACATCAAGTTTAAAGCATGAAAGTCAACAAAAGGAAACGACATTGATGGAACCAGTTTGTGGTGTAGTACGCACTCTTCCTACTACTGAGGAGGGTGAGTTTGAAAAGGAACAGCTATGTGGTCAAAAGGTTGACAAAGCAATGCCCATTTCTATGAATAGCGAAGCATTGAATATGAGTGAAGATGGTGGATTGCTGCATTCTACTATTTTGAAAGATAAACATGAAACACAGAATGAAGGAGAGAAATTAGAAAAATCAAGTAGTATGAACAATGCAACAAATCCTTCCAATATTCTGATTGAAGAAGGGGATTTAGAAGAGGGAGAAATTTCTGGAGACTTTGGAATGGATGACAATTCATTTGACATGCCTTCTGAAGATGGTTCAATTTTGCAACAGATGAAAGCAGATGAGGTTCAGAAGCCCAAAAATATAATTGGAAACATGGTGTATGCTTGCAAGATAGGAAGTGGAGAAAAGGAAGAAGGTTATAAATCTACTTCCTTCATGGTAAATTCACTTCAAGATGCCAATAGCAGTGGACTAGTGGAACCCAGTACTAGTGATAAAACTGGGGTTGCATGTGGAATTAAGGTAGCAATCTCTCGGGAAACTATTGAATATGATAAGGCAGGTGAAAATGGTTCTGCTCTGAAGCCCAGAAATAGAAAAGATAGACACGTAGGAAATAAAGGTGCCAATGACATGCCAACAAATTTAACTCAAAATCAAGCCTTGCACAGAGGTTCCTTGGAAGAAACCACTAACAATGATAATGGGAACCCATCTGCGGTGAAGATGGTTGATGCCAGTAGAAAGAGAAAACGTGGTCCTGGTTCTGAGGAGAAGAAAGATAAAGAGAAGATGGTTGGTGGCAGTAGAAAGAATAAACAGAGTCCTGGTTCTGAGGAGAAGGAAGATGATAAAAAGAAGCATATGGTCGATGCTGGTAGAAAGAAAAAACGTGGTCCTGGTTCTAAGAAGAAGAAAGAGAAAGATAAGATAAATTATCGGAAGAAGCGAGCAGAAAAGAATAGAGAACTAGGTGTTAAAAGGTTGAAGTTGCCTCCAGTACAAAAACCGAAAACTATCCCACAATGTCGCCATTATCTCAAGGGAAGGTGCCATGAGGGTGACAAGTGCCAGTTTTCACATGATGCAGTTCCTTTGACAAAATCCAAGCCATGTCTTCACTTTGCTCGTCACTCTTGCATGAAAGGGGATGATTGCCCATTTGATCATCAGCTCTCCAAGTATCCTTGTAACAATTTTGTGTCCAAAGGCTCTTGTAGCCGAGGTGATGCTTGCATGTTTTCACACCAGGTGCCAACCAACCAAGATATTCTTACACCTTCAAATGTTAGCAAACCAGAGTTGAAGTCTCTACTCTTTTCAGGAAATACAAATTTCAGTATGCCACTTAACAATCATGCCTGTAGTCCTGTCCAGCAAAACCACCTTACCAACTCCACGGGAATTCATTCTCGCTTCAATACAGAGCATAGGGTGACAAACACTTTACAGAAACAGCCTACACCAGTTCCCAAAGGAATTAGGTTCATCAATGTTGCAAAATTATCACCCAAACCCAGTACACCGAAACAAGGCATGGTAACTCCAAACAAGGAAAGTCTTGTCCAAAATGAAACCCATGCAGATCAAAATGCATCCGGCATAACGCAGAACATGGGGGAAATTCCCAAGAAATTGCCAGCTGCAACACCTAAGGGAATTAACTTTCTTTCTTTTGGCAAAGGTCCTGTTTGCAGTTTTAGAAGTTCCATTAGCTCCCATGTAAATACGGAAAATGGTATCAAGTTGCCTCAGTTAGGCAATTTTGGTTTTCGTGAGCAGGCAAATTCATCTCTAAATAAGGATGATTATGGCAAAGTTAGTGACAGAACAAAACAAAATGTACCGCAGACTGATCTATTCTCAAATCAGATTTTAGACCAAATTCAATCTGTGGCAGAAGGACTGGCGAAGTTTGCAGGGAAAGCTTCAATAGATAATTCTATGAGGGATGAAAGCCATAGTAAATCAGTTCTAGAGTGGAAAAAAGCACTTGATAATCCTCAGGCTTCAAGTCTGACCTCAGCAATGCTTCTTGTTAATCCATTTGTTTCGAACCAGTCTTCAGAACACCCAGTATCTGAATATCATAAACATGCATCAAACTCTGGACAAAGGGCAATCTTATCGACTTTAGCTTTTGCAGCAGAGCATGAACCAGATATTAAGATGAAATGCCCTGCTGGTGCTTCACCTGAATGA | 2988 | 0.409 | MEEDQLAAPNPMPFPPYRRSHLRSQTYQTLLRIFSHLSASTTPNHPLTFPHDGGGRMGQENQEKEPECSELKVDSDFMDPKDPVPQKEIQEVHETIQEVGDKGKDFSANKTTLGDIELLMGIEETSTQANCFNKEQKLMDELQLVVNGTEDLVSDDGLIPLNSGLGEKQNGGSEVDLMDYQVEHVEFLHSELNASGNASKLQVPGEHNQLASEGFHPFLMFNVSTTTKGQASSSVISTSSLKHESQQKETTLMEPVCGVVRTLPTTEEGEFEKEQLCGQKVDKAMPISMNSEALNMSEDGGLLHSTILKDKHETQNEGEKLEKSSSMNNATNPSNILIEEGDLEEGEISGDFGMDDNSFDMPSEDGSILQQMKADEVQKPKNIIGNMVYACKIGSGEKEEGYKSTSFMVNSLQDANSSGLVEPSTSDKTGVACGIKVAISRETIEYDKAGENGSALKPRNRKDRHVGNKGANDMPTNLTQNQALHRGSLEETTNNDNGNPSAVKMVDASRKRKRGPGSEEKKDKEKMVGGSRKNKQSPGSEEKEDDKKKHMVDAGRKKKRGPGSKKKKEKDKINYRKKRAEKNRELGVKRLKLPPVQKPKTIPQCRHYLKGRCHEGDKCQFSHDAVPLTKSKPCLHFARHSCMKGDDCPFDHQLSKYPCNNFVSKGSCSRGDACMFSHQVPTNQDILTPSNVSKPELKSLLFSGNTNFSMPLNNHACSPVQQNHLTNSTGIHSRFNTEHRVTNTLQKQPTPVPKGIRFINVAKLSPKPSTPKQGMVTPNKESLVQNETHADQNASGITQNMGEIPKKLPAATPKGINFLSFGKGPVCSFRSSISSHVNTENGIKLPQLGNFGFREQANSSLNKDDYGKVSDRTKQNVPQTDLFSNQILDQIQSVAEGLAKFAGKASIDNSMRDESHSKSVLEWKKALDNPQASSLTSAMLLVNPFVSNQSSEHPVSEYHKHASNSGQRAILSTLAFAAEHEPDIKMKCPAGASPE. | 996 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca5g03136 | 995 | Gene3D | - | 630 | 693 | - | - | |
Seca5g03136 | 995 | SMART | c3hfinal6 | 656 | 680 | IPR000571 | GO:0046872 | |
Seca5g03136 | 995 | SMART | c3hfinal6 | 628 | 654 | IPR000571 | GO:0046872 | |
Seca5g03136 | 995 | SMART | c3hfinal6 | 598 | 625 | IPR000571 | GO:0046872 | |
Seca5g03136 | 995 | ProSiteProfiles | Zinc finger C3H1-type profile. | 628 | 652 | IPR000571 | GO:0046872 | |
Seca5g03136 | 995 | MobiDBLite | consensus disorder prediction | 313 | 333 | - | - | |
Seca5g03136 | 995 | MobiDBLite | consensus disorder prediction | 450 | 584 | - | - | |
Seca5g03136 | 995 | MobiDBLite | consensus disorder prediction | 553 | 573 | - | - | |
Seca5g03136 | 995 | Coils | Coil | 565 | 585 | - | - | |
Seca5g03136 | 995 | Gene3D | - | 564 | 629 | - | - | |
Seca5g03136 | 995 | ProSiteProfiles | Zinc finger C3H1-type profile. | 653 | 681 | IPR000571 | GO:0046872 | |
Seca5g03136 | 995 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI | 310 | 993 | IPR045124 | GO:0003723|GO:0045892 | |
Seca5g03136 | 995 | MobiDBLite | consensus disorder prediction | 506 | 552 | - | - | |
Seca5g03136 | 995 | SUPERFAMILY | CCCH zinc finger | 600 | 624 | IPR036855 | GO:0046872 | |
Seca5g03136 | 995 | MobiDBLite | consensus disorder prediction | 40 | 67 | - | - | |
Seca5g03136 | 995 | Pfam | CCCH-type zinc finger | 605 | 624 | IPR041367 | - | |
Seca5g03136 | 995 | ProSiteProfiles | Zinc finger C3H1-type profile. | 599 | 626 | IPR000571 | GO:0046872 | |
Seca5g03136 | 995 | SUPERFAMILY | CCCH zinc finger | 657 | 683 | IPR036855 | GO:0046872 | |
Seca5g03136 | 995 | MobiDBLite | consensus disorder prediction | 472 | 502 | - | - | |
Seca5g03136 | 995 | MobiDBLite | consensus disorder prediction | 450 | 469 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca5g03136 | Seca-Chr5 | 86645144 | 86655754 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Seca5g03136 | zf-CCCH_4 | 5.6e-07 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca5g03136 | - | - | aprc:113854397 | 1116.29 |