Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03136 ATGGAGGAAGATCAACTCGCTGCCCCAAATCCAATGCCTTTTCCTCCTTACCGTCGATCTCACTTGCGCAGCCAAACTTACCAAACCCTTCTTCGCATCTTCTCCCACCTTTCTGCTTCTACCACTCCTAATCACCCCCTCACTTTTCCTCATGATGGCGGTGGTAGAATGGGGCAAGAAAACCAGGAAAAGGAGCCTGAGTGCTCTGAATTAAAAGTTGATTCTGATTTTATGGATCCCAAGGATCCTGTACCCCAGAAGGAAATACAGGAGGTCCATGAGACCATTCAAGAGGTTGGAGACAAGGGCAAGGATTTTAGTGCCAATAAGACGACACTAGGTGATATAGAACTTCTAATGGGAATAGAGGAAACATCTACACAAGCAAATTGTTTTAATAAAGAACAGAAGCTAATGGATGAATTGCAGCTAGTTGTGAATGGGACTGAAGATCTTGTTTCTGATGATGGTTTAATCCCCTTGAACTCGGGATTAGGTGAGAAACAAAATGGGGGTAGTGAAGTTGATTTGATGGATTACCAAGTAGAACATGTTGAATTTCTGCATTCTGAATTGAATGCATCTGGAAATGCTAGTAAGTTGCAAGTACCAGGAGAGCATAATCAACTTGCCTCGGAAGGCTTTCATCCGTTTTTGATGTTTAACGTGTCCACAACAACAAAGGGACAAGCCTCTTCATCGGTAATTAGTACATCAAGTTTAAAGCATGAAAGTCAACAAAAGGAAACGACATTGATGGAACCAGTTTGTGGTGTAGTACGCACTCTTCCTACTACTGAGGAGGGTGAGTTTGAAAAGGAACAGCTATGTGGTCAAAAGGTTGACAAAGCAATGCCCATTTCTATGAATAGCGAAGCATTGAATATGAGTGAAGATGGTGGATTGCTGCATTCTACTATTTTGAAAGATAAACATGAAACACAGAATGAAGGAGAGAAATTAGAAAAATCAAGTAGTATGAACAATGCAACAAATCCTTCCAATATTCTGATTGAAGAAGGGGATTTAGAAGAGGGAGAAATTTCTGGAGACTTTGGAATGGATGACAATTCATTTGACATGCCTTCTGAAGATGGTTCAATTTTGCAACAGATGAAAGCAGATGAGGTTCAGAAGCCCAAAAATATAATTGGAAACATGGTGTATGCTTGCAAGATAGGAAGTGGAGAAAAGGAAGAAGGTTATAAATCTACTTCCTTCATGGTAAATTCACTTCAAGATGCCAATAGCAGTGGACTAGTGGAACCCAGTACTAGTGATAAAACTGGGGTTGCATGTGGAATTAAGGTAGCAATCTCTCGGGAAACTATTGAATATGATAAGGCAGGTGAAAATGGTTCTGCTCTGAAGCCCAGAAATAGAAAAGATAGACACGTAGGAAATAAAGGTGCCAATGACATGCCAACAAATTTAACTCAAAATCAAGCCTTGCACAGAGGTTCCTTGGAAGAAACCACTAACAATGATAATGGGAACCCATCTGCGGTGAAGATGGTTGATGCCAGTAGAAAGAGAAAACGTGGTCCTGGTTCTGAGGAGAAGAAAGATAAAGAGAAGATGGTTGGTGGCAGTAGAAAGAATAAACAGAGTCCTGGTTCTGAGGAGAAGGAAGATGATAAAAAGAAGCATATGGTCGATGCTGGTAGAAAGAAAAAACGTGGTCCTGGTTCTAAGAAGAAGAAAGAGAAAGATAAGATAAATTATCGGAAGAAGCGAGCAGAAAAGAATAGAGAACTAGGTGTTAAAAGGTTGAAGTTGCCTCCAGTACAAAAACCGAAAACTATCCCACAATGTCGCCATTATCTCAAGGGAAGGTGCCATGAGGGTGACAAGTGCCAGTTTTCACATGATGCAGTTCCTTTGACAAAATCCAAGCCATGTCTTCACTTTGCTCGTCACTCTTGCATGAAAGGGGATGATTGCCCATTTGATCATCAGCTCTCCAAGTATCCTTGTAACAATTTTGTGTCCAAAGGCTCTTGTAGCCGAGGTGATGCTTGCATGTTTTCACACCAGGTGCCAACCAACCAAGATATTCTTACACCTTCAAATGTTAGCAAACCAGAGTTGAAGTCTCTACTCTTTTCAGGAAATACAAATTTCAGTATGCCACTTAACAATCATGCCTGTAGTCCTGTCCAGCAAAACCACCTTACCAACTCCACGGGAATTCATTCTCGCTTCAATACAGAGCATAGGGTGACAAACACTTTACAGAAACAGCCTACACCAGTTCCCAAAGGAATTAGGTTCATCAATGTTGCAAAATTATCACCCAAACCCAGTACACCGAAACAAGGCATGGTAACTCCAAACAAGGAAAGTCTTGTCCAAAATGAAACCCATGCAGATCAAAATGCATCCGGCATAACGCAGAACATGGGGGAAATTCCCAAGAAATTGCCAGCTGCAACACCTAAGGGAATTAACTTTCTTTCTTTTGGCAAAGGTCCTGTTTGCAGTTTTAGAAGTTCCATTAGCTCCCATGTAAATACGGAAAATGGTATCAAGTTGCCTCAGTTAGGCAATTTTGGTTTTCGTGAGCAGGCAAATTCATCTCTAAATAAGGATGATTATGGCAAAGTTAGTGACAGAACAAAACAAAATGTACCGCAGACTGATCTATTCTCAAATCAGATTTTAGACCAAATTCAATCTGTGGCAGAAGGACTGGCGAAGTTTGCAGGGAAAGCTTCAATAGATAATTCTATGAGGGATGAAAGCCATAGTAAATCAGTTCTAGAGTGGAAAAAAGCACTTGATAATCCTCAGGCTTCAAGTCTGACCTCAGCAATGCTTCTTGTTAATCCATTTGTTTCGAACCAGTCTTCAGAACACCCAGTATCTGAATATCATAAACATGCATCAAACTCTGGACAAAGGGCAATCTTATCGACTTTAGCTTTTGCAGCAGAGCATGAACCAGATATTAAGATGAAATGCCCTGCTGGTGCTTCACCTGAATGA 2988 0.409 MEEDQLAAPNPMPFPPYRRSHLRSQTYQTLLRIFSHLSASTTPNHPLTFPHDGGGRMGQENQEKEPECSELKVDSDFMDPKDPVPQKEIQEVHETIQEVGDKGKDFSANKTTLGDIELLMGIEETSTQANCFNKEQKLMDELQLVVNGTEDLVSDDGLIPLNSGLGEKQNGGSEVDLMDYQVEHVEFLHSELNASGNASKLQVPGEHNQLASEGFHPFLMFNVSTTTKGQASSSVISTSSLKHESQQKETTLMEPVCGVVRTLPTTEEGEFEKEQLCGQKVDKAMPISMNSEALNMSEDGGLLHSTILKDKHETQNEGEKLEKSSSMNNATNPSNILIEEGDLEEGEISGDFGMDDNSFDMPSEDGSILQQMKADEVQKPKNIIGNMVYACKIGSGEKEEGYKSTSFMVNSLQDANSSGLVEPSTSDKTGVACGIKVAISRETIEYDKAGENGSALKPRNRKDRHVGNKGANDMPTNLTQNQALHRGSLEETTNNDNGNPSAVKMVDASRKRKRGPGSEEKKDKEKMVGGSRKNKQSPGSEEKEDDKKKHMVDAGRKKKRGPGSKKKKEKDKINYRKKRAEKNRELGVKRLKLPPVQKPKTIPQCRHYLKGRCHEGDKCQFSHDAVPLTKSKPCLHFARHSCMKGDDCPFDHQLSKYPCNNFVSKGSCSRGDACMFSHQVPTNQDILTPSNVSKPELKSLLFSGNTNFSMPLNNHACSPVQQNHLTNSTGIHSRFNTEHRVTNTLQKQPTPVPKGIRFINVAKLSPKPSTPKQGMVTPNKESLVQNETHADQNASGITQNMGEIPKKLPAATPKGINFLSFGKGPVCSFRSSISSHVNTENGIKLPQLGNFGFREQANSSLNKDDYGKVSDRTKQNVPQTDLFSNQILDQIQSVAEGLAKFAGKASIDNSMRDESHSKSVLEWKKALDNPQASSLTSAMLLVNPFVSNQSSEHPVSEYHKHASNSGQRAILSTLAFAAEHEPDIKMKCPAGASPE. 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03136 995 Gene3D - 630 693 - -
Seca5g03136 995 SMART c3hfinal6 656 680 IPR000571 GO:0046872
Seca5g03136 995 SMART c3hfinal6 628 654 IPR000571 GO:0046872
Seca5g03136 995 SMART c3hfinal6 598 625 IPR000571 GO:0046872
Seca5g03136 995 ProSiteProfiles Zinc finger C3H1-type profile. 628 652 IPR000571 GO:0046872
Seca5g03136 995 MobiDBLite consensus disorder prediction 313 333 - -
Seca5g03136 995 MobiDBLite consensus disorder prediction 450 584 - -
Seca5g03136 995 MobiDBLite consensus disorder prediction 553 573 - -
Seca5g03136 995 Coils Coil 565 585 - -
Seca5g03136 995 Gene3D - 564 629 - -
Seca5g03136 995 ProSiteProfiles Zinc finger C3H1-type profile. 653 681 IPR000571 GO:0046872
Seca5g03136 995 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 310 993 IPR045124 GO:0003723|GO:0045892
Seca5g03136 995 MobiDBLite consensus disorder prediction 506 552 - -
Seca5g03136 995 SUPERFAMILY CCCH zinc finger 600 624 IPR036855 GO:0046872
Seca5g03136 995 MobiDBLite consensus disorder prediction 40 67 - -
Seca5g03136 995 Pfam CCCH-type zinc finger 605 624 IPR041367 -
Seca5g03136 995 ProSiteProfiles Zinc finger C3H1-type profile. 599 626 IPR000571 GO:0046872
Seca5g03136 995 SUPERFAMILY CCCH zinc finger 657 683 IPR036855 GO:0046872
Seca5g03136 995 MobiDBLite consensus disorder prediction 472 502 - -
Seca5g03136 995 MobiDBLite consensus disorder prediction 450 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03136 Seca-Chr5 86645144 86655754 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca5g03136 zf-CCCH_4 5.6e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03136 - - aprc:113854397 1116.29