Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03130 ATGGGCAGGGGAGGAGGAGGCGCCACCGCCGCCGCGGCGGTCGAACTCAACGGACCCGGTTCGAGGCCGGTTTTTTTCAAAGAGCCAAGGTACCGGGGCGTGAGAAAGAGACCGTGGGGCCGGTTCGCCGCCGAGATCAGAGACCCTTTGAAGAAGGCCAGGGTGTGGCTTGGAACCTTTGACACCGCCGAGGAGGCGGCGCGTGCATACGACGCCGCCGCCAGAAACCTCCGGGGACCCAAAGCGAAGACCAATTTTCCTCTCTCGCAGCCTTTTTACCACCACAGCGACGCTGCCGTCGCCGATCCATATTCAGATCATCGGTTCTACGCCGGCGCCGGCGCCGGCGAAGGGTTTCATGATCACCGGAGACCTACCTCCAGCGGCATGAGCAGCACCGTGGAGTCCTTCAGCGGTCCCCGTCCCGCCGGACCGCCGGCGCCGTCGTTCGCCGCCGCTAGGAGATACCCCCGGACACCGCCCCTTGTGCCTGAGGACTGCCACAGCGACTGCGATTCCTCGTCGTCGGTGGTAGACGACGGTGACGGCGACAACGTGGCTTCATCGCCGATGATGTCGTTTCGCCGCCAGCCGCTGCCGTTCGATCTCAACGCTCCACCGTTGGATGATGCTGACGTGGCTAACGGTGGCGGTGATGATCTTCACTGCACGGTTCTCTGCCTCTGA 687 0.6419 MGRGGGGATAAAAVELNGPGSRPVFFKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDTAEEAARAYDAAARNLRGPKAKTNFPLSQPFYHHSDAAVADPYSDHRFYAGAGAGEGFHDHRRPTSSGMSSTVESFSGPRPAGPPAPSFAAARRYPRTPPLVPEDCHSDCDSSSSVVDDGDGDNVASSPMMSFRRQPLPFDLNAPPLDDADVANGGGDDLHCTVLCL. 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03130 228 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Seca5g03130 228 CDD AP2 29 89 IPR001471 GO:0003700|GO:0006355
Seca5g03130 228 MobiDBLite consensus disorder prediction 1 20 - -
Seca5g03130 228 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Seca5g03130 228 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Seca5g03130 228 Pfam AP2 domain 29 79 IPR001471 GO:0003700|GO:0006355
Seca5g03130 228 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 30 183 - -
Seca5g03130 228 MobiDBLite consensus disorder prediction 115 192 - -
Seca5g03130 228 FunFam Ethylene-responsive transcription factor 2 30 88 - -
Seca5g03130 228 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Seca5g03130 228 Gene3D AP2/ERF domain 30 89 IPR036955 GO:0003700|GO:0006355
Seca5g03130 228 SUPERFAMILY DNA-binding domain 30 89 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03130 Seca-Chr5 86375215 86375901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03130 1 228 AP2-EREBP Transcription Factor Family AT3G20310 52.381 1.03e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca5g03130 AP2 3.3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03130 K09286 - gmx:100782025 298.901