Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03129 ATGGGTAGCGAAGAAGAGAGGGTTCTCGAGAAGCAACTCGAGCTTCAATTGCATGAGCAAAGGGATTCTCTCTCTGCTATCGATCAGGCTCTCCTCTCTGATCCAACCAACACAGAGCTCCTTGCGGTTCATGAGGAGCTTGTTCAGGCAATTAAGGATGCAGAGGAAGGACTTCTTCACCTAAAACGTGCAAGATTATTACAGGAAGCAGATTCAGTGTTGCACAAAGAGAAAGTGGAGCCCCTTGATCCCACAGATGTTAAACCAGAGCCGCTGGAGGAAAAAGGCTATTCCGTTGGATCCAAATGTAGATTCCGTCACAGAGATGGGAGGTGGTACAATGGTCAAGTGGTGCAGTTGGATAATTCAGTGGCAAAGATTTCGTTCCTTACTCCTACATCTGAGAATATGCTGGTATGTAAGATTATCTTGGGTCTCATTTTCTCTTTTACTTTGCTGAACACCAAAGTGCAGATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTACTAACTGTCGCCTATCACATGGAGTTGATGTTCAATTGCCCTCCCTTAAGAAGTATGCCCCAACAGTCTGGAATCCGTCCCTTGTGGGGTCAACTATATGGGCAGTCTCAAATGCAAATGCAGGCATTTGGAGAGAAGCTGAGCTTGAGTCCTGGAACGAAGAAGCCGGAGTTGGACAAGTTGTTTTCCGAGATGATGGAAGTTCTATGAAACTTGGTGCAGAAGGAATGGTATTATCTGAGTATGCAGAAACGAGTGACTTAGAGAGTGATTCCAGCTTAGAACAATCCGATTCTAGTGACTATGAGGAAGAAGAGGAAGAGGAATCACAGGGTTTAGGATTTCTGGAAAGTACGAACCTACAGAAAGGTATTCAAACTGAAACTGCTATATTTGCCAAGTGGGAGAACCACACTAGAGGTGTAGCCTCCAAAATGATGGCTAATATGGGTTACCGAGAAGGAATGGGTTTAGGTGTAACTGGTCAGGGAATGCTAGATCCCATACCAGTGAAGGTCCTACCACCAAAGCAATCCTTAGATCATGCACTCGAGTCTCATAAAGGAGAAGAGATCACAGAGAAGCAAGGTAAGAAAAGGAGCAGAGGTGGTAAGAGAAAACGCGAGAAGAAATTCGCAGAAGCAAATCGTGCAGCGAAAGAGGAAGAAGAATCTGCATCAGATGTCTTCACACTAATAAATAATCATCTGGCAATGCATGGTGAAGCTTCTAATGAAGGATCAATGAAGAAGCAGCAAAGTAAAAGTTCAGGTGAAGGTAAAAGGGTGGATCGACGGGCGTTGATTGCTTATGAGGATGAGGTGAAGGATTTGAAGATGCGGGTTGAAAAGCTTGAACAAATGGTGAATGCAAACAGAAAAGAGAAGGCTGTTTATGATGCTGCTATGAGAAAGTTGATTCAAACCCGCAAGGCTTTGGCAGACGCCGAAGCAGTTCACGCCTCCGCATCAAATGCAGTTGTTAGCAAAGAAAAAGAAAAGAGATGGCTGAAGTTTTAG 1533 0.4423 MGSEEERVLEKQLELQLHEQRDSLSAIDQALLSDPTNTELLAVHEELVQAIKDAEEGLLHLKRARLLQEADSVLHKEKVEPLDPTDVKPEPLEEKGYSVGSKCRFRHRDGRWYNGQVVQLDNSVAKISFLTPTSENMLVCKIILGLIFSFTLLNTKVQMCKFFLQQRCRFGTNCRLSHGVDVQLPSLKKYAPTVWNPSLVGSTIWAVSNANAGIWREAELESWNEEAGVGQVVFRDDGSSMKLGAEGMVLSEYAETSDLESDSSLEQSDSSDYEEEEEEESQGLGFLESTNLQKGIQTETAIFAKWENHTRGVASKMMANMGYREGMGLGVTGQGMLDPIPVKVLPPKQSLDHALESHKGEEITEKQGKKRSRGGKRKREKKFAEANRAAKEEEESASDVFTLINNHLAMHGEASNEGSMKKQQSKSSGEGKRVDRRALIAYEDEVKDLKMRVEKLEQMVNANRKEKAVYDAAMRKLIQTRKALADAEAVHASASNAVVSKEKEKRWLKF. 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03129 510 MobiDBLite consensus disorder prediction 355 369 - -
Seca5g03129 510 MobiDBLite consensus disorder prediction 265 283 - -
Seca5g03129 510 MobiDBLite consensus disorder prediction 379 398 - -
Seca5g03129 510 SMART G-patch_5 308 354 IPR000467 GO:0003676
Seca5g03129 510 ProSiteProfiles Zinc finger C3H1-type profile. 154 181 IPR000571 GO:0046872
Seca5g03129 510 MobiDBLite consensus disorder prediction 355 398 - -
Seca5g03129 510 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 510 - -
Seca5g03129 510 MobiDBLite consensus disorder prediction 255 290 - -
Seca5g03129 510 Coils Coil 44 64 - -
Seca5g03129 510 SMART c3hfinal6 154 180 IPR000571 GO:0046872
Seca5g03129 510 SUPERFAMILY CCCH zinc finger 154 179 IPR036855 GO:0046872
Seca5g03129 510 Gene3D - 147 191 - -
Seca5g03129 510 ProSiteProfiles G-patch domain profile. 310 356 IPR000467 GO:0003676
Seca5g03129 510 Pfam CCCH-type zinc finger 159 179 IPR041367 -
Seca5g03129 510 MobiDBLite consensus disorder prediction 411 433 - -
Seca5g03129 510 Coils Coil 376 396 - -
Seca5g03129 510 Coils Coil 439 466 - -
Seca5g03129 510 Gene3D - 84 142 - -
Seca5g03129 510 Pfam G-patch domain 310 352 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03129 Seca-Chr5 86362219 86369313 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca5g03129 G-patch 2.2e-11 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03129 - - gmx:100796284 699.893