Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03119 ATGAAGCACTACGATGAATTTGTAGAAGAAATGACTGAGATAGAAGCTGCAGTAGCTCCTTTCTGCATGGATGATGGATGCAAAAAGAGTCCTCCAACTGCCCATGGTTCTGATCAGGAGAGGAAGAAAGTGGTTCGATGGACAAAAAAGGAGCATGGACGCTTTCTGATGGGACTTAAGAACTATGGCAAAGGGCATTGGAAAAATATCGCTCGCTATTCTGTATTCACAAAGACTTCTACCCAAGTGGCAATCCATGCTCAAAAGTACTTCAAAAGGCAAAAGCTTTCTCGAGGGAAAGATAATAAAAGGAGGTCTAGTATCCATGATATCACCACTGATAATCTTACAAAGCCTACAACTAATTCAGGTCAAGACAAGCCTATTTCGTTCAATGAGTCTCTCATGCCAATTGTGCAACCAGAAGAGATTAATCACCTCAATGAGGAGCCACTCATGGAGGTTTTCAATCCAAATTATGAGTCTCTCATGACAAATGTGCAACCAGAAGGGATTAATCACCACAATGTGGAGCCACTCATGGAGGTTATCAATCCAAATTATGATGAAATGTTCATGTTCCCCTCATATGATATCTATTCTGAGACCCTCAAGTTTCAAGGTCAATAG 630 0.4095 MKHYDEFVEEMTEIEAAVAPFCMDDGCKKSPPTAHGSDQERKKVVRWTKKEHGRFLMGLKNYGKGHWKNIARYSVFTKTSTQVAIHAQKYFKRQKLSRGKDNKRRSSIHDITTDNLTKPTTNSGQDKPISFNESLMPIVQPEEINHLNEEPLMEVFNPNYESLMTNVQPEGINHHNVEPLMEVINPNYDEMFMFPSYDIYSETLKFQGQ. 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03119 209 SUPERFAMILY Homeodomain-like 41 95 IPR009057 -
Seca5g03119 209 MobiDBLite consensus disorder prediction 112 130 - -
Seca5g03119 209 NCBIfam myb-like DNA-binding domain, SHAQKYF class 42 94 IPR006447 GO:0003677
Seca5g03119 209 Pfam Myb-like DNA-binding domain 46 91 IPR001005 -
Seca5g03119 209 CDD SANT 46 91 IPR001005 -
Seca5g03119 209 ProSiteProfiles Myb-like domain profile. 39 91 IPR001005 -
Seca5g03119 209 Gene3D - 45 96 - -
Seca5g03119 209 MobiDBLite consensus disorder prediction 95 130 - -
Seca5g03119 209 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 95 IPR017930 -
Seca5g03119 209 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 155 IPR043363 -
Seca5g03119 209 SMART sant 43 93 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03119 Seca-Chr5 86220893 86221793 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca5g03119 Myb_DNA-binding 1.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03119 - - gmx:100783469 174.096