Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03111 ATGGCATCTGCTTCAGACTCATGGATGAAGGAATATAATGAAGCAATGAAACTAGCCGATGATATTAGTGGCATGATTTCTGAACGGAGTTCATTTCCTGCATCTGGACCAGAAACCCAGCGTCATGCATCTGCTATAAGAAGGAAGATCACAATATTGGGAACCAGGCTTGATAGTTTGCAATCCCTTTTATCAAAGCTCCCTGTAAAAATGATGCACAGGTCTGAGAAGGATATGAATCGTCGTAAGGACATGCTTGCAAATTTGAGGTCGAAAGTTAACCAAATGGCTTCAACATTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGCTTGGGCCAGATATAAAGCCAGATGCAATGAGCAGAACTGTTGGCTTGGATAACAGTGGACTCGTTGGTCTTCAACGGCAAATTATGAAAGAGCAAGATGAGGGCCTTGAGAAATTGGAGGAGACTGTAATAAGTACAAAACATATTGCATTGGCAGTGAATGAAGAGCTGAATCTACACACTAGACTCATTGATGACTTGGACCAACATGTAGATGTTACAGATTCTCGGCTGAGGCGAGTGCAGAAGAACTTGGCAATTTTAAACAAACGTACCAAAGGTGGTTGCTCCTGCTTGTGCATGCTTTTATCAGTGGTTGGTATAGTGGTTTTGGTGGTTGTTATATGGCTGTTGGTGAAATATTTGTAA 702 0.4131 MASASDSWMKEYNEAMKLADDISGMISERSSFPASGPETQRHASAIRRKITILGTRLDSLQSLLSKLPVKMMHRSEKDMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPDIKPDAMSRTVGLDNSGLVGLQRQIMKEQDEGLEKLEETVISTKHIALAVNEELNLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCSCLCMLLSVVGIVVLVVVIWLLVKYL. 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03111 233 PANTHER SYNTAXIN 39 220 IPR045242 -
Seca5g03111 233 FunFam syntaxin-51 isoform X2 139 201 - -
Seca5g03111 233 Pfam SNARE domain 174 225 IPR000727 -
Seca5g03111 233 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 137 199 IPR000727 -
Seca5g03111 233 CDD SNARE_Qc 140 197 - -
Seca5g03111 233 Gene3D - 139 201 - -
Seca5g03111 233 SUPERFAMILY SNARE fusion complex 128 198 - -
Seca5g03111 233 SMART tSNARE_6 132 199 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03111 Seca-Chr5 86165524 86169528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03111 1 233 SNARE and Associated Proteins AT1G16240 72.650 3.07e-124 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03111 K08503 - gmx:100794038 380.178