Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03099 ATGGTGTTACTGCTACTGAATTTGGCTCACGACCATGCACAGGTGGTGCCTATTTCACTCTTCGTCGCTGTTCTCTGCCTCTGCTTGCTCATTGGTCACTTGCTCGAAGAAAACCGTTGGGTTAATGAATCCATTGTTGCCATTCTAATTGGATGCATTGCTGGAATGATACTCTTATTTATCACTAAGGGGAAAAGTTCTCACATCCTTACTTTTAATGAAGAACTATTCTTCATATATCTCCTTCCTCCCATAATATTCAATGCAGGATTTCAGGTGAAGAAGAAACAGTTCTTCCATAACTTCTTAACCATCATGCTATTTGGGGTGATTGGTGTTTTTATTTCATCATTTGTTATTACAGGAGGCAGCTGGTGGCTGTTCCCCAAGTTGAACTTCCTTGGCCTAACTGGGCGAGATTATCTTGCTATAGGAACAATTTTCTCATCAACGGACACAGTTTGTACACTACAGGTTCTCCATCAAGATGAAACTCCTTTACTATACAGCCTAGTCTTTGGGGAAGGAGTGGTAAATGATGCAACATCAGTTGTTCTCTTCAATGCAGTGCAAAAGGTTGATGTTTCAAGACTTGATGCCAGGATATTGCGTGTCATTGGAGATTTCTTGTATCTATTTTCAACAAGCACTGGTCTTGGAGTTATAGCTGGACTTCTGACAGCATATATCTTAAAAGCCTTAAGCTTTGGAAGACATTCAAGTGTTCGTGAAATTGCATTGATGGTGTTAATGGCATACCTATCCTACATGTTGTCTGAGCTACTTGAACTGAGTGGAATCCTCACTGTTTTCTTTTGTGGAATATTTATGTCACACTATGCATGGCACAATGTGACCGAGATTTCAAGAATCACAACCAGGCATGTGTTTGCTTCATTGTCATTTATTGCAGAAACCTTCATATTTCTTTATGTGGGCATGGATGCCCTTGACATGGAAAAGTGGAAGATGACCCAATTAAGTTTCGGAAATTTGATGGGAATTTACAGCTGCTTAATCTTATTAATATTGCTTGGGCGGGCTGCATTTGTTTTCCCCCTCTCTGCTTTATCCAATTATATGAATAGGCGAGCTGACCAAGCATCAAGTATCACATTCAAACAGCAGATAATCATTTGGTGGGCTGGGCTAATGAGGGGAGCAGTCTCCATTGCTCTAGCTTTCAAACAGTTCACATTTTCTGGGGTTACTTCTGATCCAGTCAATGCAACAATGATTACCAACACCATTATTGTTGTCCTTTTCAGCACACTGGTGTTTGGTTGTTTTACAAAACCACTTATTAGATATCTGCTTCCCCACAATGCAACAAGTATAAATATCAGCCCTGAAGAATCAGGTCCAGCTGCTGAGGACTTGAATCTACCTTTGCTATCACTTGAGGAATCAGCAGCAACCAACATCAGCCGGGCAAAGGAAGGTTTGTCCATGTTAATAGAAAGTCCTGTGTACACCATACATTACTATTGGAGGAGGTTTGATGATGCCTACATGAGACCTATATTTGGGGGACCTCATCGAAACCGGTCAGAGTGCTAG 1560 0.4103 MVLLLLNLAHDHAQVVPISLFVAVLCLCLLIGHLLEENRWVNESIVAILIGCIAGMILLFITKGKSSHILTFNEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMLFGVIGVFISSFVITGGSWWLFPKLNFLGLTGRDYLAIGTIFSSTDTVCTLQVLHQDETPLLYSLVFGEGVVNDATSVVLFNAVQKVDVSRLDARILRVIGDFLYLFSTSTGLGVIAGLLTAYILKALSFGRHSSVREIALMVLMAYLSYMLSELLELSGILTVFFCGIFMSHYAWHNVTEISRITTRHVFASLSFIAETFIFLYVGMDALDMEKWKMTQLSFGNLMGIYSCLILLILLGRAAFVFPLSALSNYMNRRADQASSITFKQQIIIWWAGLMRGAVSIALAFKQFTFSGVTSDPVNATMITNTIIVVLFSTLVFGCFTKPLIRYLLPHNATSINISPEESGPAAEDLNLPLLSLEESAATNISRAKEGLSMLIESPVYTIHYYWRRFDDAYMRPIFGGPHRNRSEC. 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03099 519 PRINTS Na+/H+ exchanger signature 90 104 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca5g03099 519 PRINTS Na+/H+ exchanger signature 105 113 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca5g03099 519 PRINTS Na+/H+ exchanger signature 76 87 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca5g03099 519 PRINTS Na+/H+ exchanger signature 145 155 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca5g03099 519 PANTHER SODIUM/HYDROGEN EXCHANGER 11 512 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Seca5g03099 519 Gene3D - 137 189 - -
Seca5g03099 519 Pfam Sodium/hydrogen exchanger family 22 435 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03099 Seca-Chr5 86061410 86066370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03099 7 519 Antiporters AT5G55470 72.008 0.0 770
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03099 - - gmx:100813332 867.07