Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03082 ATGGAATCGGATCTTGGCAAGCTCTTCATTGGAGGAATATCTTGGGACACTGATGAGGAACGTCTCAAAGAATATTTTGGGAAATATGGGGAGGTGATAGAGGCTGTGATCATGAGAGATCGCGCAACAGGCCGTGCTCGTGGTTTTGGTTTCGTTGTCTTTGCTGATCCTGCTGTTGCAGAAAGAGTCATTATGGATAAGCACATAATTGATGGCCGCACAGTTGAAGCAAAGAAAGCTGTTCCTAGGGATGATCAACACAACATAAATAGACAATCTGGTAGTGTACATGCATCTCCTGGTCCTGGACGTACAAAAAAGATTTTTGTTGGAGGTTTACCGTCAACTATCACGGAAAGTGATTTTAAGAAGTATTTTGATCAGTTTGGTACAATTACTGATGTTGTAGTTATGTATGATCACAATACCCAGAGACCAAGAGGTTTTGGTTTCATTACATATGATTCAGAAGAAGCTGTGGATAGAGTGCTTTTTAAAACTTTTCATGAACTCAATGGAAAGATGGTTGAAGTCAAGAGGGCAGTTCCCAAAGAGCTTTCCCCTGGTCCCAGCCGAAGCCCGTTGATAGGATATAACTATAGTTTGAATAGGGCCAGTAGCTACCTAAATAGTTATGCTCAGGGTTATAGTATGAGTCCAATAGGAGGATATGGAGTCAGGATGGATGGTAGGTTTAGTCCACTTGCTAGTGGTAGAACTGGATTCTCTCCTTTTGGCAACACTGGTTATGGAATGGGGATGAATTTGGATTCAGGATTGAGCCCAAGCTTTGGAGGGAATTCTAATTATGGGAACAATTTAGGATATGGTCGAATATTTAGTCCTTTCTATGGTGGCAACTCAAGCAGATATACCACTCCCATAGGCTATAATGGGGGTAATGGGAGAAACGATTCTCTTATGAACTCAACTTCTAGGAATGTCTGGGGAAATGGGGGCCTGAATAATGCCAATAACCCAGTCAGCCCTGGTGCTTTCTTGGGATCTGGAAGTGGGACTTTTGGTGTTTCAATTGGAAATAGTGGCACAAATTGGGGTCCATCCATTCCAGCCCAGGGTGGAGGTGCTGCTTCTGGCTATGCTACTGGGAGTAATGTTTATGAAGGTGGAGATAGCAGCTTTGGATTAGGTGGGGGAGGGTATGGAAGAAACAGCAGTACTGGTGTGACTCCATCCTCTACATTTAATGCATCATCTGGTGGTTATGATGGTTCCTATGGGGACTTGTACCGCAGTGGCAGTGGTTCAGTTTACAATGACTCTACTTGGCGGTCTGCTGCTTCTGAGATAGATGGTTCTGGCTCTTTTGGTTATGGTCTTGGTGGTATAGCTTCAGATGACCCAGTAAAGAGTTCTGAGGGTTATATTGGAAACTACAATGTTACAAGTAGGCAATCTAATAGAGATTCTTGA 1434 0.4331 MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRATGRARGFGFVVFADPAVAERVIMDKHIIDGRTVEAKKAVPRDDQHNINRQSGSVHASPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPSRSPLIGYNYSLNRASSYLNSYAQGYSMSPIGGYGVRMDGRFSPLASGRTGFSPFGNTGYGMGMNLDSGLSPSFGGNSNYGNNLGYGRIFSPFYGGNSSRYTTPIGYNGGNGRNDSLMNSTSRNVWGNGGLNNANNPVSPGAFLGSGSGTFGVSIGNSGTNWGPSIPAQGGGAASGYATGSNVYEGGDSSFGLGGGGYGRNSSTGVTPSSTFNASSGGYDGSYGDLYRSGSGSVYNDSTWRSAASEIDGSGSFGYGLGGIASDDPVKSSEGYIGNYNVTSRQSNRDS. 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03082 477 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Seca5g03082 477 MobiDBLite consensus disorder prediction 454 477 - -
Seca5g03082 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Seca5g03082 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 164 IPR000504 GO:0003723
Seca5g03082 477 Gene3D - 103 189 IPR012677 -
Seca5g03082 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Seca5g03082 477 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Seca5g03082 477 MobiDBLite consensus disorder prediction 462 477 - -
Seca5g03082 477 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Seca5g03082 477 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 475 - -
Seca5g03082 477 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Seca5g03082 477 Gene3D - 6 88 IPR012677 -
Seca5g03082 477 SMART rrm1_1 107 179 IPR000504 GO:0003723
Seca5g03082 477 SMART rrm1_1 7 78 IPR000504 GO:0003723
Seca5g03082 477 CDD RRM2_Hrp1p 107 184 - -
Seca5g03082 477 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Seca5g03082 477 MobiDBLite consensus disorder prediction 80 102 - -
Seca5g03082 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03082 Seca-Chr5 85832271 85836334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03082 5 180 Eukaryotic Initiation Factors Gene Family AT2G23350 24.157 2.80e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03082 K14411 - gmx:100805131 845.114