Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03079 ATGGTTAATTCAGGGGCCAGTGGTCATGTAGAGGCTGATTCAGACGAATTAAACCCTGGGGGCAACATAGCAACTGGGCTTCAAGCATCACAAGTTGAGGGTAGGGGCACTGGACTTTCAGTTGCTGCTGAGAGAGTATCTGATGATGGATACAATTGGCGAAAATATGGGCAAAAACATGTTAAAGGAAGTGAATTTCCACGCAGTTATTACAAATGTACACATCCTAACTGTGAAGTGAAGAAACTGTTTGAACGCTCTCATGATGGCCAAATCACTGAGATAATTTACAAGGGAACACATGACCATCCTAAACCCCAACCAAACCGCCGATACTCCGCCGGAACTATTATGTCTATGCAAGAAGAGAGATCTGATAAGGCTTGCTTGACTAGCCGAGATGACAAAGGATCCAATAATTATGGCCAGGTGTCTCACACAGCTGAGCCTGACAGTACTACAGAGCTATCACCTGGGGCAACAAATGATGATAGTCTAGAGGGTGCGGGATTTTTGTCAAACCGGAATAATGATGAGGTTGATGATGATGATCCCTTCTCAAAGCGAAGAAAAATGGATCTTGGAAATGCTGACATCATTCCTGTAGTTAAGCCTATCCGGGAGCCACGGGTTGTTGTACAAACTCTGAGTGAGGTTGATATATTAGATGATGGTTATCGCTGGCGCAAGTATGGGCAGAAGGTGGTGAGAGGCAATCCTAACCCTAGGAGTTATTACAAATGCACAAATGCTGGTTGCCCTGTTAGAAAACATGTGGAGAGGGCATCTCATGATCCAAAAGCTGTAATAACCACATATGAAGGTAAACACAATCATGATGTACCAACTGCAAGGAATAGTTGCCATGACATTGCAGGACAAGCAGGTACAGGTGGACAGACAAGAATTAGACCAGAAGAAAGTGATACTATTAGCCTTGATCTTGGGATGGGCATTAGCCCAGCTGCTGAAAATAGATCAAACAGTCAAGGGAGAATGCAACTTAATGAATTTGGGGACAGTCAAACTCATACCAGCAATTCCAATTTCAAGTTTGTTCATACTACCCCAGCTCCAGTATACATTGGTGTACTAAATAACAACTCAAATCCATATGGTTCTAGAGAAAATCCGAGTGATAGTCAATCTTTAAACCATTCTGCATATCCTTGCCCGCAGAACATGGGAAGAATACTAATGGGTCCCTAA 1209 0.4318 MVNSGASGHVEADSDELNPGGNIATGLQASQVEGRGTGLSVAAERVSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPNRRYSAGTIMSMQEERSDKACLTSRDDKGSNNYGQVSHTAEPDSTTELSPGATNDDSLEGAGFLSNRNNDEVDDDDPFSKRRKMDLGNADIIPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARNSCHDIAGQAGTGGQTRIRPEESDTISLDLGMGISPAAENRSNSQGRMQLNEFGDSQTHTSNSNFKFVHTTPAPVYIGVLNNNSNPYGSRENPSDSQSLNHSAYPCPQNMGRILMGP. 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03079 402 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 33 330 IPR044810 GO:0003700
Seca5g03079 402 ProSiteProfiles WRKY domain profile. 42 106 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca5g03079 402 ProSiteProfiles WRKY domain profile. 217 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca5g03079 402 MobiDBLite consensus disorder prediction 123 189 - -
Seca5g03079 402 SUPERFAMILY WRKY DNA-binding domain 44 106 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca5g03079 402 MobiDBLite consensus disorder prediction 367 393 - -
Seca5g03079 402 SUPERFAMILY WRKY DNA-binding domain 214 282 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca5g03079 402 SMART WRKY_cls 222 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca5g03079 402 SMART WRKY_cls 47 105 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca5g03079 402 FunFam WRKY transcription factor 38 107 - -
Seca5g03079 402 Gene3D WRKY domain 207 283 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca5g03079 402 Gene3D WRKY domain 39 107 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca5g03079 402 MobiDBLite consensus disorder prediction 1 24 - -
Seca5g03079 402 MobiDBLite consensus disorder prediction 367 390 - -
Seca5g03079 402 MobiDBLite consensus disorder prediction 134 172 - -
Seca5g03079 402 Pfam WRKY DNA -binding domain 48 104 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca5g03079 402 Pfam WRKY DNA -binding domain 223 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca5g03079 402 FunFam WRKY transcription factor 33 209 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03079 Seca-Chr5 85773675 85780161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03079 14 402 WRKY Transcription Factor Family AT4G26640 61.616 1.52e-159 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca5g03079 WRKY 8.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03079 - - gmx:100127383 728.783