Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03078 ATGCAAACTTCTCAGAAACATGAAATTACTTATGGCTCTGGCAGGTTCTATGTTGAGCCTGTACAAAATCTGGAGTCATATTGCTTTCCTTCAAGTGAGAACCTTGACAATTACTGTTCCTCTGACAACAGTTGCCAGACAACCTATCCTTCTGTCCAGACTTTAGAACGATATTGCACTCTTGAATCTGCTTCAACAAGCAACAGTTTCCCTTACCAAAATTCTCCATCTGCTATCAGTTTCTCATCTAACAATAGTCCAGTGTCAAAGGTAGAGTCAAACTCATATGTGTTAAGGCCACAGAATTCTCTTGAAATTGTTAATGGCTCACCTGAAGATGATTCTTACTTGACACATGACCTTGATGACCTGACACATAAGATAAGAGAGCTAGAAACTGCTATGCTGGGACCTAATGCAGATATGCTAGATATATATGATGCTGTAATTCCAGAAGAATCTGATTCATTCTTATTGGAGGCAGAGAAGTGGAAGAAATTGATGGAGATGGTATCTAGAGGGGATTTGAAAGAGATGCTTTATACTTGTGCAAAAGCAATGGCTGTGAATGATATGGAGACAACTGAATGGCTGGTGTCAGAGTTGCGCAAAATGGTGTCCATTTCAGGCAATCCAATCCAACGATTGGGAGCATACATGTTGGAGGCTCTTGTTGCAAGGATGGCCTCTTCAGGAAGCATAATCTACAAATCCTTAAAGTGTAGTGAGCCTACTGGTAATGAACTACTTTCATACATGCATGTACTTTATGAAATATGCCCATACTTCAAGTTTGGGTATATGTCAGCAAATGGAGCAATTGCTGAGGCTATGAAGGAAGAAAGTGAAGTCCACATAATTGATTTTCAGATTAGCCAGGGAACCCAGTGGGTGAGCCTAATCCAGGCTCTTGCTCACCGGCCTGGAGGACCCCCAAAGATCAGAATAACAGCTGTTGATGACTCAGTTTCAGCTTATGCCAGGGGAGGGGGACTTGATATTGTGGGGAAAAGGCTATCAACACTTGCACAGTCATGTCATGTACCCTTTGAGTTCCATGCTGTCAGAGCTGCTGCTTCTGAGGTGCAACTTGAAGACTTTGAGCTTCGACCTGATGAAGCTGTGGCAGTGAATTTTGCCATTATGCTGCACCATGTGCCAGATGAAAGTGTTAACAGTCATAATCATCGTGACCGGTTGTTGAGATTGGCCAAGCACTTGTCTCCTAAGGTAGTGACTCTGGTTGAGCAAGAATTTAATACCAACAATGCTCCATTCTTGCAGCGTTTCGTTGAGACAATGAACTACTACTTGGCTATTTTTGAATCACTTGATGAGGTTATGCCAAGGGAGCACAAAGAGAGGATTAATGTGGAACAGCATTGTTTGGCTCGAGAAGTTGTCAACTTAATAGCATGTGAAGGAGCAGAAAGAGTGGAACGTCATGAGCTTCTGAATAAGTGGAGAATGCGTTTTACAATGGCTGGTTTTACACCTTATCCATTGAGCTCCTTCATTAATTCTTCAATCAAGGATCTTCTGGAGGGCTACCGTGGACATTATACTCTAGAAGAGGCAGATGGGGCACTATATCTTGGTTGGAAGAATCAAGTTCTTGTTGCTTCTTGTGCTTGGAGATGA 1641 0.4235 MQTSQKHEITYGSGRFYVEPVQNLESYCFPSSENLDNYCSSDNSCQTTYPSVQTLERYCTLESASTSNSFPYQNSPSAISFSSNNSPVSKVESNSYVLRPQNSLEIVNGSPEDDSYLTHDLDDLTHKIRELETAMLGPNADMLDIYDAVIPEESDSFLLEAEKWKKLMEMVSRGDLKEMLYTCAKAMAVNDMETTEWLVSELRKMVSISGNPIQRLGAYMLEALVARMASSGSIIYKSLKCSEPTGNELLSYMHVLYEICPYFKFGYMSANGAIAEAMKEESEVHIIDFQISQGTQWVSLIQALAHRPGGPPKIRITAVDDSVSAYARGGGLDIVGKRLSTLAQSCHVPFEFHAVRAAASEVQLEDFELRPDEAVAVNFAIMLHHVPDESVNSHNHRDRLLRLAKHLSPKVVTLVEQEFNTNNAPFLQRFVETMNYYLAIFESLDEVMPREHKERINVEQHCLAREVVNLIACEGAERVERHELLNKWRMRFTMAGFTPYPLSSFINSSIKDLLEGYRGHYTLEEADGALYLGWKNQVLVASCAWR. 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03078 546 ProSiteProfiles GRAS family profile. 167 546 IPR005202 -
Seca5g03078 546 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 126 540 IPR005202 -
Seca5g03078 546 Pfam GRAS domain family 176 546 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03078 Seca-Chr5 85768788 85772084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03078 1 546 GRAS Transcription Factor Family AT1G50600 57.169 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca5g03078 GRAS 4.2e-134 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03078 - - gmx:100785400 961.059