Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03076 ATGGCAGAAATGGCTGTGTCTTTCGCTCTTGACCAACTGCTTCCACTATTAAGGGAAGAAGCCACTCTGCTCATAGGCGTTCACCAAGATTTTGAAGAGATTAAAGATGAACTAGAAAGCATCCAAGCCTTCCTTAAGGATGCAGATAGAAGAGCTACAGCGGCTGAAGGCGAAGGAGTCAAAACATGGGTGAAGCATGTGAGAGAAGCAGCTTTCCGCATAGAAGACATCATTGATGAATATATGATCCATGTGGGAGGAGTAGGACACCACCCTCGTGATCCCGGATCATGTGCAGCTTCTCTCCATAAGATTACTCACTGCATCAAGACTTTAATCCCTCGCCATCGAATAGCATCTCAGATTCAGGACATTAAGTCTCGTGTCCGTAAGATCAAGGATAGAAGTAACAGATATGAGTTCCAAAGCCAACCATCTTTCCAACACCAATCAGGAGGAAACGTTGTCTCATTGCAGAACCTTCAAGAGGATCCTCTTTACATTGAGGATACTGAAGTTGTAGGCTTTGAAGCCCCAAAAGCTAAATTGATCGACTGGTTGGTGAAGGGAACAACAGAGCGCACTGTCATCTGTGTGGTTGGAATGGGAGGGCAGGGAAAAACCACTCTTGCCAAGAAAGTTTTTGACAACAAGGATGTGGTTAAGCACTTTGATTGTCATGCATGGATCACAGTGTCTCGTTCCTACACTCCAGAAGGTTTGCTCAAGGACATGTTAAGGGAGTTTTACAAAGAAAAACACGAGTCTCTTCCTCAGGATATTCTCAACATGGACCGAAGGTCATTGATTGATGAAGTGAGAAACTACTTGCAGCAAAATAGGTACGTTGTTGCATTTGATGATGTATGGAACCAAAGCTTTTTGGATGGGATTGAGCATGCTGTACTTGATAATAAGAATGGAAGTAGGATATTAATCACAACTAGGAACATGGAGGTTGCCGTGTTATCTAGGAAAAAATCTATTGTGGAGGTGCATGAGATTCAACCTTTGACTCAAAGTGAATCTCTAGAATTGTTCTATAAGAATGCATTCCGATCAAACAATGGACGTTGTCCACAAGAATTCATTCATATATCTTCTCAAATTGTTCAAAAATGCAGTGGTTTACCACTAGCAATTGTGGTCATTGCTCGTCTTTTATCTACCAAAGAAAGGGATACATTTGAATGGGACAGGTTTAATAGAAATCTCACTTCAGATCTAGAGCAGAATCCCAATTTAGCTGATATAGTGAAGATTTTAGGTTTCAGCTATGATGATTTGCCTTCCCATCTTAAGTCATGCTTATTGTATTTTGGAATATATCCTAAAGATTATGAAATTAAATCCAAGAGGCTAATCCGGCAATGGATAGCTGAAGGGTTTGTAAGAAATGATGGAGGGAAAACTTTAGAGGAAATTGCAGAACAATATTTAGCAGAGTTGATCAATAGAAGCCTGGTGCAAGTATCTTCATTTACCATTGATGGCAAAGCTAGAAAGTGCCGTGTTCATGACCTATTACGTTGGACAATGATCCTTAGAAAATTTGAGGATTTAAGTTTTTGCCACCATATCAGTGAAGTTGAAAGGGTAGCCTGGTACAATAGGATAATTCGGCGCCTATCAATATCAACCAATAATTACAATTATTTACTGCAAAGTATTGGAAGCTCCCACACTCGGTCACTGCTTGTTTTTGCTGGTAAAAAATCACCTTTACCTTCAGCCTTTTTGAAGAGGATCCCTGTAAAATTCAAGCTATTGAAGGTTCTTGATTTTGAAGATGGTCAGTTGTATTCTGTTCCTGAAGAATGGGGGAATTTATCCCACTTGAAGTATTTAAACTTAAGGCAAACAAGGCTGGAACCTGAAATTTTTCTAAAATTCATTGGTAAGCTTCAAAACTTGGAGACCTTGGATACCAGGAATACATCTGTCCGTGAGATGCCAAAGGAGATTAGCAAGCTTAGAAAGCTAAGACATCTTTTGGGTGATTGCATGTCTTTGGTTCAATTGAAGGATGGTATTGGAGGCATGACATCCCTACAGACCCTACGTTATGTGGATGTAGATAAGGATGGAGGAGAAGAACTAATTCAAGAGCTTGGAAAGTTGAGACAGTTAAGGGAATTAGGCCTCATTGGAGTTAAGAGAGAGCATGGAGGTGCTCTATGTTCCTCAATAAATGAGATGCAAGAATTGGAAAAACTACGTATAGCAGGAGAAGAAATTGACTTGCATTTTATTTCTTCCCCTATGCTTCGGGATCTTCATCTGGAAGGGAGGTTAACTAAGTTGCCAGAGTGGGTTCCAAAGCTCCAACATCTTGTGAAATTGTTCTTGCGATCCTCCAAGTTAATTGATGATCCATTGAATTTACTACAAAATATGTCAAATTTGTTGCTCCTCAGTCTCTCAGTTGATTCATATGAAGGTTTGCAGAACTTGAGTTCCATCGTGATCCATAGTGAAGCACTGCATTCTCTAAAAAAGCTCAGGTTATCAAATGTCCCCCAACTCAAGATGGTACCCTCTGGTATCCAATACTTAAGGAGTCTTGAAGTTCTCGACATTCATGACATGTCAACTGAATTTAATGAGAGCATTGCTCCTGATGGAAGAGCAAGGAATCCCATAATCAGTCATGTGCCTCTTGGGCCAAGCTTCCAGTGCAACAGAAATTCAGAGTTTTCCATGTGGAATTTCAAAGCAATGGCTTTGTGTCTTTCTTTTCCGGCTTTGGCAATTCCCTTCTTAATTTCTTTAAAAAAAAAAAACAGAATTGTGGAGTTGCCTTTCCTTAATAATAGTACATGA 2823 0.4003 MAEMAVSFALDQLLPLLREEATLLIGVHQDFEEIKDELESIQAFLKDADRRATAAEGEGVKTWVKHVREAAFRIEDIIDEYMIHVGGVGHHPRDPGSCAASLHKITHCIKTLIPRHRIASQIQDIKSRVRKIKDRSNRYEFQSQPSFQHQSGGNVVSLQNLQEDPLYIEDTEVVGFEAPKAKLIDWLVKGTTERTVICVVGMGGQGKTTLAKKVFDNKDVVKHFDCHAWITVSRSYTPEGLLKDMLREFYKEKHESLPQDILNMDRRSLIDEVRNYLQQNRYVVAFDDVWNQSFLDGIEHAVLDNKNGSRILITTRNMEVAVLSRKKSIVEVHEIQPLTQSESLELFYKNAFRSNNGRCPQEFIHISSQIVQKCSGLPLAIVVIARLLSTKERDTFEWDRFNRNLTSDLEQNPNLADIVKILGFSYDDLPSHLKSCLLYFGIYPKDYEIKSKRLIRQWIAEGFVRNDGGKTLEEIAEQYLAELINRSLVQVSSFTIDGKARKCRVHDLLRWTMILRKFEDLSFCHHISEVERVAWYNRIIRRLSISTNNYNYLLQSIGSSHTRSLLVFAGKKSPLPSAFLKRIPVKFKLLKVLDFEDGQLYSVPEEWGNLSHLKYLNLRQTRLEPEIFLKFIGKLQNLETLDTRNTSVREMPKEISKLRKLRHLLGDCMSLVQLKDGIGGMTSLQTLRYVDVDKDGGEELIQELGKLRQLRELGLIGVKREHGGALCSSINEMQELEKLRIAGEEIDLHFISSPMLRDLHLEGRLTKLPEWVPKLQHLVKLFLRSSKLIDDPLNLLQNMSNLLLLSLSVDSYEGLQNLSSIVIHSEALHSLKKLRLSNVPQLKMVPSGIQYLRSLEVLDIHDMSTEFNESIAPDGRARNPIISHVPLGPSFQCNRNSEFSMWNFKAMALCLSFPALAIPFLISLKKKNRIVELPFLNNST. 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03076 940 Gene3D - 4 119 - -
Seca5g03076 940 FunFam Probable disease resistance protein At1g61300 157 328 - -
Seca5g03076 940 Gene3D - 426 515 IPR036388 -
Seca5g03076 940 Gene3D - 337 425 IPR042197 -
Seca5g03076 940 CDD RX-CC_like 2 134 IPR038005 -
Seca5g03076 940 Gene3D - 155 333 IPR027417 -
Seca5g03076 940 Pfam NB-ARC domain 178 428 IPR002182 GO:0043531
Seca5g03076 940 PRINTS Disease resistance protein signature 850 866 - -
Seca5g03076 940 PRINTS Disease resistance protein signature 196 211 - -
Seca5g03076 940 PRINTS Disease resistance protein signature 374 388 - -
Seca5g03076 940 PRINTS Disease resistance protein signature 276 290 - -
Seca5g03076 940 SUPERFAMILY L domain-like 519 863 - -
Seca5g03076 940 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 440 IPR027417 -
Seca5g03076 940 Pfam Rx N-terminal domain 5 87 IPR041118 -
Seca5g03076 940 Coils Coil 31 51 - -
Seca5g03076 940 Gene3D Ribonuclease Inhibitor 561 878 IPR032675 -
Seca5g03076 940 PANTHER DISEASE RESISTANCE PROTEIN RP 32 855 IPR044974 GO:0006952
Seca5g03076 940 FunFam Probable disease resistance protein At1g63360 426 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03076 Seca-Chr5 85704430 85708284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03076 196 393 WRKY Transcription Factor Family AT5G45050 29.557 1.31e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03076 K13457 - gmx:100789363 931.013