Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03071 ATGGAAGGGGGTGAAAGTGAAACTATGAGCCTTGATTGGGAACAAGCAGTGAGGAAGTATGAGAATGTTATAGCCTCAGGGACCAAATCTATGAAAATGAAAGCTATGGTCATGCTGGCCCGTTACTCTAAACATGCCCCTGAGCATGTATTAGCTCGCACCATACCTATTCTCACTGAGATTCTTGACCAAGATATTTCAAATGATTCTGCTCCTTCACTTCAAGAGGCTGCTGCTTATTGCTTGAAGTGCATTGTTAGCAGAGGTGATGGTGGGTTGGCAATTGAAATTGGTGGACATGGTGCTACACATTCTTTGATAAGGTTGTTGCCTCATTCTGAGGGAAAGATGCAGGAAATCCTGATAAAATGTTTGCTGGTTATTGTCAGTTTTTGCAATGCAAGTAGGACAGTTGTTGCTACCAATGGTGGATTAGAAATCATCATCAATTTATTGAATTCTTGCACCAATGATACTAGGAGGTATCTGTTAGAGATTTTGAGTGTGTTGGCATTGCGGAGGGATGTTAGGAAGGCACTCACTAGATTAGGAGCTCTTCATTTTGTTGTGGAGGCTGCTGGTACTGGCAGCATGGTCTCTAGGGAAAGAGCATGTCAATCAATTGGGTTGCTTGGAGTCACAAGACAAGCTAGGCGTATGCTTGTTGAATTGGGAGCTATACCGGTGCTTGTGGAGTTGTTTCGTGATGGAGATCACAAAGCAAAACTTATAGCTGGTAATTCTCTTGGTGTGGTATGTGCTCATGTTGATTACATTAGACCAGTTGCTCAAGCTGGGGCTATTCCCCTTTATGCTGAGCTCCTTCAAGGACTTGATCCTTCTGGTAAGGAGATAGCCGAGGATGTGTTTTGTATACTGGCTGTTGCAGAGGCAAATGCTGTTGAAATTGCTGGACACTTGGTGAGAATTCTCAGAGAAGGTGATGAAGAAGCAAAAGCAGCAGCTGCTGATGTGGTGTGGGATCTGTCAGGTTACAAGCACTCAACATCTGTGGTCCGGGATTCAGGTGCAATCCCTATCCTTGTTGAGCTTTTGGGCAGTGGAACTGAAGAGTTAAAGGAGAATGTTTCTGGGGCATTTGCTCAGCTAAGCTATGATGGAGAAGATAGAATGGCACTTGCTGAGGCAGGGGCAATTCCAATTCTCATTGACTTGCTGCATAATGAAACTGAGGAACTAAGGGATAATGCTGCAGAGGCTCTTGCCAACTTCTATGAAGATCCATTATACCATGACAGAGTATCTGATGCAGTTAATGTTCCTTCATTCAGAAATATGCAGAATAGACTGATTCATATCCGTGCATCGAACGAGCACATGAATAGATCCTTACGAAGAATGAGTGTTGAGCAGCTCATTTGGAACCCAGATATTGTATAA 1401 0.4354 MEGGESETMSLDWEQAVRKYENVIASGTKSMKMKAMVMLARYSKHAPEHVLARTIPILTEILDQDISNDSAPSLQEAAAYCLKCIVSRGDGGLAIEIGGHGATHSLIRLLPHSEGKMQEILIKCLLVIVSFCNASRTVVATNGGLEIIINLLNSCTNDTRRYLLEILSVLALRRDVRKALTRLGALHFVVEAAGTGSMVSRERACQSIGLLGVTRQARRMLVELGAIPVLVELFRDGDHKAKLIAGNSLGVVCAHVDYIRPVAQAGAIPLYAELLQGLDPSGKEIAEDVFCILAVAEANAVEIAGHLVRILREGDEEAKAAAADVVWDLSGYKHSTSVVRDSGAIPILVELLGSGTEELKENVSGAFAQLSYDGEDRMALAEAGAIPILIDLLHNETEELRDNAAEALANFYEDPLYHDRVSDAVNVPSFRNMQNRLIHIRASNEHMNRSLRRMSVEQLIWNPDIV. 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03071 466 Gene3D - 331 459 IPR011989 -
Seca5g03071 466 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 384 411 IPR000225 GO:0005515
Seca5g03071 466 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 343 385 IPR000225 GO:0005515
Seca5g03071 466 SMART arm_5 373 413 IPR000225 GO:0005515
Seca5g03071 466 SMART arm_5 42 87 IPR000225 GO:0005515
Seca5g03071 466 SMART arm_5 332 372 IPR000225 GO:0005515
Seca5g03071 466 SMART arm_5 132 172 IPR000225 GO:0005515
Seca5g03071 466 SMART arm_5 255 295 IPR000225 GO:0005515
Seca5g03071 466 SMART arm_5 214 254 IPR000225 GO:0005515
Seca5g03071 466 SUPERFAMILY ARM repeat 54 413 IPR016024 -
Seca5g03071 466 Gene3D - 13 330 IPR011989 -
Seca5g03071 466 Coils Coil 390 410 - -
Seca5g03071 466 Pfam Armadillo/beta-catenin-like repeat 336 371 IPR000225 GO:0005515
Seca5g03071 466 Pfam Armadillo/beta-catenin-like repeat 377 410 IPR000225 GO:0005515
Seca5g03071 466 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 307 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03071 Seca-Chr5 85672910 85675123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03071 262 446 U-box Gene Family AT2G28830 27.451 7.46e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03071 - - gmx:100819735 753.821