Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03066 ATGGATACATTGAGTGAAGAAATTTTTTATAATATGATGGATAGAGGAGATTATAATATTTCTGACTCTGCGAACTTAAGAAATTTTAAGGAGAGGGATAAAGATGAAGTACATTGTCAAAACTTACCAGAAGGTCAGAAAAGGATTAATGAACTAACAGTTGATGATATTAAGGGTCTTGAATTTGATTCGGAAGAGGCTGCCTATGATTTCTATTCTGAGTATGCAAAATTTAAAGGATTTGCTGTTAGGAAAGATGATGTTTATCGGGATCGCAATAATTTGATTAGAATGAGGCAAATGGTTTGTAACAGGCAAGGGGAGAGAAGTGAAAAACATTTAAATAGGGCTGATAGAATTAGGGAGGCAAAGGCTATTACACGTACTAAATGTCATGCAAGGATTAGGGTTCATTTAGATTATAAGACCAGGAAGTGGAGGGTAGGGTTGTTTGAGCCAAATCACAATCATGACTTGACTCCTACCAATATGGTGCATTTGCTACCTGCTTATCTTGGTTTGAGTGCCGGTGATAAAGCTCAGGTTGATAGTCTTCACTTATATGGTGTTAGGACATGCCATATAATTGGTTTAATTATGGGTCAGAAGGGTGGATATTCTGATCTGGGTTTCTGCGAGAAGGATTTGTATAATCATATTGATAAGCAGAATAGAGCAAAAATAGGGGACGGTGATGCATTTGCAGCTTTGTGCTATCTGCAAGCAAAATCTGACAATAATCCTAAGATGTTTATTAAGTTTACAACCAGTGAAGATGATAGACTACAGAACTTGTTCTGGGCTGATATTGGTAGTAGAATTGACTATATATGTTTTGGGGATGTTGTTGCCTTTGACACAACATACAAGAAAAATAAGTATAACCGACCTTTGGTAATTTTCTCTGGTTATAACCATCATGGTGAGACTTCTATATTTGGATGTGCACTTGTTGCTGATGAGAAGACTGAAACTTACAAGTGGGTTCTTGAATCTTTTTTGGAGGCAATGTTTAATAAAATTCTGAAAGCTGTGGTAACTGATGGGGATGGTGCAATGCGTGAAGCTATAAGGACTGTTTTTCCAGGTGCACTTCACAGATTGTGCTCATGGCACCTTCATCAAAATGCATGTGAAAATGTGAAGAATCCCAAGTTTCTGGAAGATTTTAAGCCTCTTGTATATGGAAATTTCAGTGTAGAGAAGTTTGAGGATGAGTGGAAGAAGGTCATTGACAATAATGGTCTAAACAACAATAAATGGGTGAGAAAAGTCTATGATTTGAGGAGGATGTGGGCCACTGCATACCTGAGGGATACCTTTTTTGGTGGAATAAGGACAACTTCAATTTGTGAAGGGATTAATTCCTTTATTAAGAGGTATGTTCAAAGCAAAAATAGTCTTGTTGATTTCCTCCATAACTTTGAGAGAGCCATTAATGAATACAGGCACAATGAGTTAATGTCTGATTTTAAGTCTTTGTACACTGATCCGGTTTTGACAACAGCACTGCAAAAGTATGAAGTTGATGCTTCTAAGATCTTCACTAGGAATAAGTTCTTTGATGTAAGAAAGCAAATTGAGAAAGTAGCAGCATTGAATATGATAGATAGATCAGAAGTTGGAACTGAAGTTAGACTGAAATTAAATAAGTTTGGAGGTCCAGATTCTGTGTATTTTGTGTTGTGTGATAAGGCTAATGGTAAATTTGTTTGTGATTGTCGCTTATTTGAATCATGTGGTATCCCATGCTCTCACATCTTTTGTGCTATGAAGCATGAGCAAGTTGAATCCCTTCCCTCAAGTTTGGTCTGTAAAAGATGGACAAAGTATGCAAAAGTTCAAAACATATTTGATGTATATGGTGAAGAAGATGACTCATCAAAAAAGGATTTGTTGAGGTCTGGTGCTGTATCTGCAGCCTGCAATGGGCTTAGGAATGTAGTAGATAATAGACCATACCACTTTGTAAAAAACATTGAAAGAATTCACAAGTTGGCTGATGAAATTGAAAGGGAGGATGGTGGTGATATTAAAAATGGAGATATATCAAAGATTGTTCGTGATCCAACCATAGTCAAAACCAAAGGAGCTCCAAGAAAGAGTAAGAAAATGAAGAAAAAGAGAAAATGTTCTTTTTGTAAGAGGTCTGGACACACAATTAGGACGTGCAGTAAGTTCTCCACTCGTGATCAGTTGAATACGGTTGTTGAGGAGGAATCTTCTGTAGAGACAGATGATGAATCAAGGGATGATTATACATTTCCTGATGTGGAATCATCCAGACATGGGGTTACAGGTTCTTTGAATCATATTAGTGCATCTGACAAAGTGAATTTACCTGAGATGGAGCACAAGGGTGTTGGTCTCAGAAATTTTATGCCTGACAATATTGGTTGTGCATTGGGTAATCAAACTCAGTTGTCAATGATGAACCCTACAAGGATGTCTGTAGATATGAACTTCAGACCATCAATGATGCAAGGTTTTGATCAAGGTTTTATGGGTAGCAGGGCTAATTATGTCCCAAATTATCCTCAGTTGCATATGCCAAGTTATCCTCAAATGCATATGCATCAAGGAGTATACGGTTCTTCAATGTATCCAGGGATGAATGCTATTGGTCATTATTCACAGTTTACAAATACTTTAAATGAGGTTGAGAGGAACGCTGCTGTTGGAAAAATGGGCTTCAGTCATGATGGTGGACATCGTTGA 2718 0.3723 MDTLSEEIFYNMMDRGDYNISDSANLRNFKERDKDEVHCQNLPEGQKRINELTVDDIKGLEFDSEEAAYDFYSEYAKFKGFAVRKDDVYRDRNNLIRMRQMVCNRQGERSEKHLNRADRIREAKAITRTKCHARIRVHLDYKTRKWRVGLFEPNHNHDLTPTNMVHLLPAYLGLSAGDKAQVDSLHLYGVRTCHIIGLIMGQKGGYSDLGFCEKDLYNHIDKQNRAKIGDGDAFAALCYLQAKSDNNPKMFIKFTTSEDDRLQNLFWADIGSRIDYICFGDVVAFDTTYKKNKYNRPLVIFSGYNHHGETSIFGCALVADEKTETYKWVLESFLEAMFNKILKAVVTDGDGAMREAIRTVFPGALHRLCSWHLHQNACENVKNPKFLEDFKPLVYGNFSVEKFEDEWKKVIDNNGLNNNKWVRKVYDLRRMWATAYLRDTFFGGIRTTSICEGINSFIKRYVQSKNSLVDFLHNFERAINEYRHNELMSDFKSLYTDPVLTTALQKYEVDASKIFTRNKFFDVRKQIEKVAALNMIDRSEVGTEVRLKLNKFGGPDSVYFVLCDKANGKFVCDCRLFESCGIPCSHIFCAMKHEQVESLPSSLVCKRWTKYAKVQNIFDVYGEEDDSSKKDLLRSGAVSAACNGLRNVVDNRPYHFVKNIERIHKLADEIEREDGGDIKNGDISKIVRDPTIVKTKGAPRKSKKMKKKRKCSFCKRSGHTIRTCSKFSTRDQLNTVVEEESSVETDDESRDDYTFPDVESSRHGVTGSLNHISASDKVNLPEMEHKGVGLRNFMPDNIGCALGNQTQLSMMNPTRMSVDMNFRPSMMQGFDQGFMGSRANYVPNYPQLHMPSYPQMHMHQGVYGSSMYPGMNAIGHYSQFTNTLNEVERNAAVGKMGFSHDGGHR. 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03066 905 Pfam MULE transposase domain 282 376 IPR018289 -
Seca5g03066 905 MobiDBLite consensus disorder prediction 737 769 - -
Seca5g03066 905 SMART 26again6 570 597 IPR006564 GO:0008270
Seca5g03066 905 ProSiteProfiles Zinc finger SWIM-type profile. 559 595 IPR007527 GO:0008270
Seca5g03066 905 PANTHER OS01G0519700 PROTEIN 57 618 - -
Seca5g03066 905 Pfam FAR1 DNA-binding domain 70 160 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03066 Seca-Chr5 85629196 85633213 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca5g03066 MULE 6e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03066 - - tpra:123910662 768.074