Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03064 ATGGGGACGCGTGAGTTGTGGGTTTACTGCTTAGAGTACAAAGAAAGTGGCGCGAAATGGGTTAGGGGTACAACCTCTGAGATCAAGAAAACTCACGGGCGATCGGAATACCTTCTAGATTACATTGGCGTTCTAACGGCAGTCTCGGAAGAGATTAACTTGACCAAAGAGGAGAGGCAGACAAGAATGATATTGCTGGACATGGCTGATGAAACGGGGGACATTAGGTGTGCAATTTTCGGCAGCATGGTGGACACTGTAATGGGGTACCTCACACTTCCTCGCATTGGGCTTCCTATAGTTATCATTCAGTTCGCAAGGATAAACATCTATAAGGGAGAAGTTGGAATCCAGAATCTAATGAATGCTTCCAAGGTTCTATGGAACCCAGAGATACCAGAGGCCATAGAGTTCAAAAATAGCCTAGCTGTGCATGAGGTCGAGACAGATCTTCAGATTGGAACAATATCTGACCGAAGCAGGCCTGCTTCCATTAAGGATGAGTTTCTCAAACTGTACCCTAGGAAGTCTTTGTATGAGCTACTGCAGACAAATGAGGATGGATGCTTCATCATTCTAGGAACTGTTGACGAAGTTATGCAAGAATCTTTGTGGTGGTATATGGCGTGCAAGTGCATGAAGGCGGTTTCCTACGATGACGGGGTACCTTACTGCGAGGATTGTGATCTTTATGTTCCAGACTGTACTCCAAGGTACAAGTTAAAGCTTGCTGTCTCCGACGGATCTGATAGCGTTAGTTTGATCCTTTTCGACTCTGAGAGCTACTCATTGTTGGGCAAGTCGTGTCGTGAACTGTTATCGGAGAAGAGGTACACTCGGACATGTCCTTACCCTGCTGCTCTAATGGACTTAGTTGGACATGAGTTCCTATTTTGCGTTGAGGTCAAAGATGATGCTGTGTACTCATTTGATGAGTGCTTCAGGGTGCGACGAGTTTCATCTGAACCCACACTGATTCGAGGGTACACTGAAGGATTAGAGGAGGAAACTCCACTTAAGCTCAAGTTTGCACCGAGTTTTACCAAGAATGTTACGTCTGAAGGGTCAAGCACTGGCATGCATGTGTCTGCTATTTGCAATGCTTCTGTCACTGAAATAGATGTTAGCCCATTATCAAATGATCCCTCGCCATTTGTTGGTGAAGACAGTGGGAGTGCATCGAAGAGGGAACCTGGGCATGCAACGGAATGTGCCACTGATAAGAAGAAACGGGGCAGGGGGAAGTCCATCAAACTGGAAAGAACTTGA 1269 0.461 MGTRELWVYCLEYKESGAKWVRGTTSEIKKTHGRSEYLLDYIGVLTAVSEEINLTKEERQTRMILLDMADETGDIRCAIFGSMVDTVMGYLTLPRIGLPIVIIQFARINIYKGEVGIQNLMNASKVLWNPEIPEAIEFKNSLAVHEVETDLQIGTISDRSRPASIKDEFLKLYPRKSLYELLQTNEDGCFIILGTVDEVMQESLWWYMACKCMKAVSYDDGVPYCEDCDLYVPDCTPRYKLKLAVSDGSDSVSLILFDSESYSLLGKSCRELLSEKRYTRTCPYPAALMDLVGHEFLFCVEVKDDAVYSFDECFRVRRVSSEPTLIRGYTEGLEEETPLKLKFAPSFTKNVTSEGSSTGMHVSAICNASVTEIDVSPLSNDPSPFVGEDSGSASKREPGHATECATDKKKRGRGKSIKLERT. 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03064 422 CDD RPA1_DBD_C 190 305 IPR047192 -
Seca5g03064 422 SUPERFAMILY Nucleic acid-binding proteins 173 307 IPR012340 -
Seca5g03064 422 Pfam Replication factor-A C terminal domain 190 306 IPR013955 -
Seca5g03064 422 Gene3D - 24 152 IPR012340 -
Seca5g03064 422 Gene3D - 166 327 IPR012340 -
Seca5g03064 422 CDD RPA1_DBD_B_like 40 142 - -
Seca5g03064 422 MobiDBLite consensus disorder prediction 377 422 - -
Seca5g03064 422 SUPERFAMILY Nucleic acid-binding proteins 31 145 IPR012340 -
Seca5g03064 422 MobiDBLite consensus disorder prediction 393 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03064 Seca-Chr5 85572752 85575452 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03064 31 272 Core DNA Replication Machinery Family AT5G08020 23.828 4.38e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03064 - - lja:Lj1g3v3385890.1 278.1