Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03060 ATGTGCTGTATGGACGCACCTAGGAAGTTGGTTGCCCTGCGAGGGCCTCCTTGGAGTGCTCGGCCCATTAAGGTGGCCCAAATATCAGTATATACCTCAACATTTGTGTCTGTGGTTACTTTTGGTACTTGTATGCTTATAGGGATCCCACTTGAATCAGGGAAGATCCTATCTTCAATTGAAACATTCCAGAATCTTCAAGGACCCATTTATAATCTTCCAGGCACAATTTCATTGATGATACAAACTAAGGTCTCTCTTGACAGGATTGCATCTTTTCTCTGTCTTGATGACATGCAGTCTGATATTGTGGAGAAGCTTGCACGCGGTAGTTCTGATACAACAATTGAAGTAGTTGATGGACATTTCTCTTGGGATTTTATTTCCACTAATGCAACATTGAAAAACATAAATCTCAAAGTTTTTCATGGCATGAGGGTTGCTTTTTGTGGTACTGTTGGATCAGGCAAGTCTACTTTACTTTCTTGTATATTAGGAGAAGTACCAAAGATATCAGGGACCCTGAAGGTGTGTGGAACAAAGGCCTATGTGGCTCAGTCTCCATGGATACAAAGTGGCAAGATAGAAGAGAACATATTATTTGGAAAAGAGATAGACAAGGAAAAGTATGAGAAGGAATGCTTGTTGGGTCTTTTAAGTTCAAAGACAGGGGTTTATGTCACTCATCAAGTAGAGTTCTTACCTGCAGCTGACCTTATCTTGGTCATGAAGGATGGGAAAATTACTCAATGTGGAAAGTACAATGATCTAGTCAGTTTAGGCACTGATTTCATGGAACTTGTTGGTGCTCATAGAGAAGCTTTGTCTGCACTTGATTCATTAGATGAGAACACAGTATCCGATAAAATAAATACATCACAAAAGGATGTTATTGTCTCTCTTTCTCATGATGTTGAAGAAAAAGATGTTAAGAAAGATGTCAAGAACATAGTGCAAAATGTTGAAACAGATGACAAATGCGATCCTAAAGGCCAACTTGTTCAAGAAGAAGAAAGAGAGAAAGGTAAAGTTGGGATTTCAGTCTATTGGAAATATATCACAACAGCATATGGAGGAGCACTTGTACCACTCATATTGCTGGCTGAAATTATGATTCAACTTCTTGAAATCGCTAGCAACTATTGGATGGTTTGGGCAACTCCCATTTCAACAGATGTGGAGCCACCTGTTGGAGGAAGTACACTTCTAGTTGTCTATGTAGCTTTGGCTACAAGAAGTTCTTTTTGTATCCTTGCCAAAGTAACACTTGTTGTCACAGTTGGTTTTAAGACAGCTACCCTACTCTTCAATAAAATGCATTTTAGCATTTTCCGTGCTCCGATGTCATTTTTTGATGCCACTCCAAGTGGGAGAATCCTTAATAGGGCTTCTACTGACCAAAGTGTAGTGGATATGGGCATTCCTTTTCTAACTGCATCATTTGCTTCCTCCATGATCCATCTCCTTGGAATTATAGTGGTCATGTCTCAGGTTGCATGGCATGTTTTCATTGTCTTTATTCCTGTGACAGTTATCGGCATCTGGTACCAGCAATATTACTTACCATCAGCCCGAGAACTATCTCGTTTAGTTGGAGTATGCAATGCTTCTGTCATTCAACACTTTGCAGAAACAATTTCAGGTACATCAACCATCAGGTGTTTTGATCAGGTGTCAAGATTTGAGCAAACAAGCATGAAACTGATGGATGGATATTCTCGACCCAAGTTCAATATAGTTGGTGCTAAGCAATGGTTGTGCTTTCGCTTAGATATGTTGTCTTCTATCACATTTGCCTTTTGCTTGATATTCTTGATATCTGTTCCAGAGGGAGTCATAGATTCAGGTGTTGCTGGACTAGCTGTAACCTACGGCCTTAGTCTGAACATTATACAAGAATGGATGATTTTGGGACTTTGCAACTTGGAGACCAAAATAATATCAGTAGAAAGAATACTTCAGTATACTTCCATTCCTAGTGAGCCTCCTCTTATTGTAGAGGAGAACAGGCCACATACTTCTTGGCCATCATATGGCACAATTGATATTCACAACTTGCAGGTGCGTTATGCTCCACATATGCCACTTGTGTTGCGGGGCCTTACATGCACATTTCTTGGAGGAAAGAAAACTGGAATTGTTGGGAGAACGGGTAGTGGTAAATCCACTCTCATACAATCACTTTTCCGAATTATTGAGCCTACTTTTGGGAGAATTATGATTGATGGCATCAACATTTCTTCCATTGGACTTCATGATTTGAGGTCTAGATTGAGCATAATTCCTCAGGATCCAACCATGTTTGAAGGTACTGTGAGAAGTAACCTTGACCCACTGGAAGAGTACACAGATGAACAAATTTGGGAGGCCCTGGATAAGTGTCAACTTGGAGATGAAGTTAGAAGGAAAGAAGGAAAGTTAGATTCTGCAGTTAGTGAGAATGGTGAGAATTGGAGTATGGGTCAGAGGCAGTTGGTATGTTTAGGTAGGGTGCTGCTTAAGAAGAGTAAGGTGTTGGTGTTAGATGAAGCTACTGCATCAGTTGACACAGCTACAGATAATTTGATTCAGCAAACTCTTAGGCAACATTTCTCTGATTGCACAGTCATTACCATTGCACATAGAATAACTTCTGTTATTGACAGTGACATGGTTCTATTACTTAATCAAGGACTTGTTGAGGAGTATGATTCCCCAACAAGATTGCTAGAGGACAAGTTATCGTCTTTTGCTCAACTTGTTGCAGAGTATGCCGCAAGATCCAACACCAGTTTTGACCAACTAAAATAA 2790 0.4011 MCCMDAPRKLVALRGPPWSARPIKVAQISVYTSTFVSVVTFGTCMLIGIPLESGKILSSIETFQNLQGPIYNLPGTISLMIQTKVSLDRIASFLCLDDMQSDIVEKLARGSSDTTIEVVDGHFSWDFISTNATLKNINLKVFHGMRVAFCGTVGSGKSTLLSCILGEVPKISGTLKVCGTKAYVAQSPWIQSGKIEENILFGKEIDKEKYEKECLLGLLSSKTGVYVTHQVEFLPAADLILVMKDGKITQCGKYNDLVSLGTDFMELVGAHREALSALDSLDENTVSDKINTSQKDVIVSLSHDVEEKDVKKDVKNIVQNVETDDKCDPKGQLVQEEEREKGKVGISVYWKYITTAYGGALVPLILLAEIMIQLLEIASNYWMVWATPISTDVEPPVGGSTLLVVYVALATRSSFCILAKVTLVVTVGFKTATLLFNKMHFSIFRAPMSFFDATPSGRILNRASTDQSVVDMGIPFLTASFASSMIHLLGIIVVMSQVAWHVFIVFIPVTVIGIWYQQYYLPSARELSRLVGVCNASVIQHFAETISGTSTIRCFDQVSRFEQTSMKLMDGYSRPKFNIVGAKQWLCFRLDMLSSITFAFCLIFLISVPEGVIDSGVAGLAVTYGLSLNIIQEWMILGLCNLETKIISVERILQYTSIPSEPPLIVEENRPHTSWPSYGTIDIHNLQVRYAPHMPLVLRGLTCTFLGGKKTGIVGRTGSGKSTLIQSLFRIIEPTFGRIMIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDKCQLGDEVRRKEGKLDSAVSENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLNQGLVEEYDSPTRLLEDKLSSFAQLVAEYAARSNTSFDQLK. 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03060 929 CDD ABC_6TM_ABCC_D2 362 656 IPR044726 GO:0140359
Seca5g03060 929 Gene3D ABC transporter type 1, transmembrane domain 325 662 IPR036640 GO:0005524|GO:0016020
Seca5g03060 929 FunFam ABC transporter C family member 3 664 916 - -
Seca5g03060 929 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 683 915 IPR003439 GO:0005524
Seca5g03060 929 SMART AAA_5 143 247 IPR003593 GO:0016887
Seca5g03060 929 SMART AAA_5 707 892 IPR003593 GO:0016887
Seca5g03060 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 670 905 IPR027417 -
Seca5g03060 929 Gene3D ABC transporter type 1, transmembrane domain 18 96 IPR036640 GO:0005524|GO:0016020
Seca5g03060 929 Gene3D - 664 917 IPR027417 -
Seca5g03060 929 Pfam ABC transporter 134 184 IPR003439 GO:0005524
Seca5g03060 929 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 212 917 - -
Seca5g03060 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 259 IPR027417 -
Seca5g03060 929 Gene3D - 215 296 IPR027417 -
Seca5g03060 929 Gene3D - 97 214 IPR027417 -
Seca5g03060 929 Pfam ABC transporter 699 846 IPR003439 GO:0005524
Seca5g03060 929 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 364 628 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca5g03060 929 Pfam ABC transporter transmembrane region 364 606 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca5g03060 929 SUPERFAMILY ABC transporter transmembrane region 362 662 IPR036640 GO:0005524|GO:0016020
Seca5g03060 929 CDD ABCC_MRP_domain2 679 899 - -
Seca5g03060 929 FunFam ABC transporter C family member 5 325 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03060 Seca-Chr5 85515863 85520528 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03060 679 929 Calmodulin-binding Proteins AT2G36910 27.451 2.82e-28 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03060 - K05666 zju:107433373 1211.05