Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03050 ATGATGTGGAAAATCTCCTTAAAGAGGTGGCAGATTTGGAGCAAAGCATGGGGGCAAACAACAATTGCTTTCAAAAGATATTGTTTATGCGAGCAAATGGTGGAGAAGATAAAAGCAATGAGGACGTTTAAAGGCAAAAGTAATATTCAACCATTTTCTCACCCTGCTCCACTTCCAGGCATTCAGTATGGGTCATCTGAAAACATTATTTACTTTGAATCAACAAAAGTGGCTTATAATGAACTCTTGGAGGCACTCAAGGATGATAGCATCTATATGATAGGAGTGTATGGAATGGGTGGATCTGGGAAAACAACTCTTGTAACAGAAGCTGGTAAAAAGGCTGAACAATTGAATTTGTTTGATAAGGTTATATTAATCACAGTGTCTCAAACCCCAAGCATTAGAGACGTTCAAGGAAAAATAGCAGATATGTTAAACTTGAAACTGGAGGAAGAAACTAAAGAGGGAAGAGCACAGCGAATATGGCAGAGTTTGAAAGAAAAGAAGCGAATTCTTGTCATAGTCGATGATTTATGGAGGAAATTTAATTTAGAGGATATTGGGATTTGCTTACACAATGATAACAAGGGTGCATGGAAAATCCTTATAACCACTCGTAATCAAGGTGTATGTACTTCAATGGACTGTCAAAAGAAGATTCATTTGGGGCTCTTATCTGAAGACGAGTCTTGGTCCTTGTTCCAAAAGCATGCAAACATTGATGATGGATTCTCTAAGTCACTAGATGATGTGCCAAGAAAACTTTGCGATGAATGTAAAGGACTACCCATAGCAATAGTAACTGTGGGATCTTCCTTAAAAGGAAAATCTAAAGATGAGTGGGAGGTAGCACTAAACAGCTTGAGGGATTCAGAGGCGTTTAATGATCACGAAGAAGGAGTGAGAGCAGCTTTATGTTGTCTCAAATTAAGCTATGATTATTTAGAAAACAATGAAGTAAAGCTGCTCTTTTTGATGTGTTCTATGTTTCCAGAAGACTATAACATCTTAATAGAAGATTTGATCCAATTGGCAATTGGACTAGGTGTGGGAGGAAGATCTTCGTTAAAGTCAATGAGGAGCTGGATCAAAGCAGGCATAAACAAACTTCTAGATTCTTGTTTGTTGATGAGTAATGACTACTTAATAATACATGGTCAGGAAAGCAAAGAATACATGAAGATGCATGATATGGTTCGTGAGGCAGCCTTATGGATAGCAAAGAAATTTGAGAATTGCAAAATTTTGGTAAATGTTGACAAACCACTTAGCACCTTGGCAGAGGATGATAATATAAGAGATTGTTTTGCAGTATCATCATGGTACAAAGAAAATCAAATCTTTTGTAAATTGCATGCTCCAAAGCTTGAAATTCTATTGCTAAATACTGTGATTGGGAGAAAAATTGGGACTTTATCACATGAATCATTTGAAGAAACACAAAGGCTTAAGGTGTTTTCTGTAACGAAGAATACAAAATACTATGTTGATCGACCATTATTACAATTCCCTCAAACAATCCATTTGTGGATAAATCTTCAAATTTTGCGCTTGAATGGATGGGAGTTAGGTGACATTGCTTTCATAGAAAGCTTAACAACACTACAGGTTCTTGACTTGCGACAGTGTGAATTTAATGAACTTCCTAATGAAATAGGAAAACTCCAAAGATTGAGACTGTTAGATTTGTCAGAATGTGATATTCTTCGAGAAAATTATAATGGAGCAATAGGAAAATGTTCACAACTAGAAGAATTATACGCTTCTGAATGTGGGCCAGAAAAGTACCTTTGTCAAATTGCTATGGATATTGGTATTCTCCCAAAACTACAGAGGTTTGTAATACATACTGGCCACATTGATATACCATATTATGCAGAATGCATGAGAGTTCTAGCAGTAACAGGTTTTAATATCTCTGAATTGAGGGCACATAAAAGGAATATTCTACAAACAGCTGAAATTATTGGTTTGAAACGCCTTGCTGGAGGATGTAAAAGTATTATCCCAGACATGGGAGATATGAATGATTTGACTAGTCTCTGTCTTGAATTTTGCAAAAAGATTGAATGCATCTTTGATACAACCTCTGATTCAGAGATAGATGATTTGATTCCCAGGTTGGTTGATTTAAGGTTGTCGGGATTGTACATATTGAAAGAATTGTGTCAAGGTCCACCTATGAAAGTGCTACCCTTTTTTGAGAAATTAAAAAGACTTGAAATATGGAACTGCCCGCAGTTGCACAGCATATTCCCATCAGAATGTACCTTAAAAAATCTTAAGATCCTTGTAATAGACCGTTGCATGTCAGTTCAAGCACTCTTCTCAACACATGTTGCTCAAAGTCTGCAGCAACTAGAAGAGCTCACTATAGCATATTGTAAGGAATTGAAACATATAATTGCAAAAGGAAGAGACCAGGGAATAGTTCCAGCTCCAAGGAATTCTCATTTTCTCATGCCTAGTTTGAAGACACTTTGCATTGATTCTTGTTGGAAGTTAGAGTTAATATTCCCAATCTGTTGTGTTGAAGGACTTGCACAACTGCAGCAAATACAGATAAGCGGGGCTCCTAGGCTGAAATATGTATTTGGTGAATGTGATCACGATGATCATTCATCTCACCAATACCAGAACTACGTCATGCTTCCTCATTTGGAAGTTCTCTCACTTGAATCTCTTGAAAATCTTGTTGGAATATGTCCTGAAAACTATCACACAAAGTGGTCATCTCCAAGGAAGCTAACTATGAAAAATTGTCCAAAATTGGCTACATCATGGATCGCTGTGATGGCTGGTTCTGATCAGAGACAACATCATCTGAATGAAAACTTACCCTCAAAACTGCAAGAACTGTATTTAGACAGTTTACCTCAAATGAACTTCATATCATGGGTGGGTCCTACTCCAAGACTGATTATAAGTCTCCAATGTCTTCAGCATTTACATGTGAATAAATCTGAAAACTTGAAATCTCTGTTCTCCATGGAAGTACAAAGAACCCTACCAGAGTTGATGTCCCTTACTATATGTGATTGCCAAGAATTGGAACAAATCATTGCAGCAAATAAAGAACTTGTACAACTGCCCAATGCTGAAGTTTGTTTTCCAAAGCTAACAGACATAAGGGTCAAAAACTGCAACAAGTTGAAAAGCCTTTTCTCTGTTGCTATAGTTAGAATGCTTCCACAATTAAGAACTCTTCACATATCAAATGCTACTCAACTGGAAGAGATTTTTAGACATGGCAGTGGAGACAGCACTACCAATGAAATGGAAATTATGCTTCCAAACTTGACAAAGATAAAACTGTATAAGCTGTTGAGTTTTGTTGATATCTGCCAGGGTTGTAAGTTACGGGCTGTGAAACTTCAAGAACTCGACATAGATGAATGCCCCAAAACTGCTCCAAGTTTGATAGAAATTCAGGTGCTACTAGAAGAAGCGGAGGCCATTAGGAGAAGATGA 3474 0.3716 MMWKISLKRWQIWSKAWGQTTIAFKRYCLCEQMVEKIKAMRTFKGKSNIQPFSHPAPLPGIQYGSSENIIYFESTKVAYNELLEALKDDSIYMIGVYGMGGSGKTTLVTEAGKKAEQLNLFDKVILITVSQTPSIRDVQGKIADMLNLKLEEETKEGRAQRIWQSLKEKKRILVIVDDLWRKFNLEDIGICLHNDNKGAWKILITTRNQGVCTSMDCQKKIHLGLLSEDESWSLFQKHANIDDGFSKSLDDVPRKLCDECKGLPIAIVTVGSSLKGKSKDEWEVALNSLRDSEAFNDHEEGVRAALCCLKLSYDYLENNEVKLLFLMCSMFPEDYNILIEDLIQLAIGLGVGGRSSLKSMRSWIKAGINKLLDSCLLMSNDYLIIHGQESKEYMKMHDMVREAALWIAKKFENCKILVNVDKPLSTLAEDDNIRDCFAVSSWYKENQIFCKLHAPKLEILLLNTVIGRKIGTLSHESFEETQRLKVFSVTKNTKYYVDRPLLQFPQTIHLWINLQILRLNGWELGDIAFIESLTTLQVLDLRQCEFNELPNEIGKLQRLRLLDLSECDILRENYNGAIGKCSQLEELYASECGPEKYLCQIAMDIGILPKLQRFVIHTGHIDIPYYAECMRVLAVTGFNISELRAHKRNILQTAEIIGLKRLAGGCKSIIPDMGDMNDLTSLCLEFCKKIECIFDTTSDSEIDDLIPRLVDLRLSGLYILKELCQGPPMKVLPFFEKLKRLEIWNCPQLHSIFPSECTLKNLKILVIDRCMSVQALFSTHVAQSLQQLEELTIAYCKELKHIIAKGRDQGIVPAPRNSHFLMPSLKTLCIDSCWKLELIFPICCVEGLAQLQQIQISGAPRLKYVFGECDHDDHSSHQYQNYVMLPHLEVLSLESLENLVGICPENYHTKWSSPRKLTMKNCPKLATSWIAVMAGSDQRQHHLNENLPSKLQELYLDSLPQMNFISWVGPTPRLIISLQCLQHLHVNKSENLKSLFSMEVQRTLPELMSLTICDCQELEQIIAANKELVQLPNAEVCFPKLTDIRVKNCNKLKSLFSVAIVRMLPQLRTLHISNATQLEEIFRHGSGDSTTNEMEIMLPNLTKIKLYKLLSFVDICQGCKLRAVKLQELDIDECPKTAPSLIEIQVLLEEAEAIRRR. 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03050 1157 PRINTS Disease resistance protein signature 166 180 - -
Seca5g03050 1157 PRINTS Disease resistance protein signature 260 274 - -
Seca5g03050 1157 PRINTS Disease resistance protein signature 93 108 - -
Seca5g03050 1157 PRINTS Disease resistance protein signature 554 570 - -
Seca5g03050 1157 Gene3D Ribonuclease Inhibitor 754 869 IPR032675 -
Seca5g03050 1157 Gene3D Ribonuclease Inhibitor 883 1083 IPR032675 -
Seca5g03050 1157 Pfam NB-ARC domain 81 314 IPR002182 GO:0043531
Seca5g03050 1157 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 328 IPR027417 -
Seca5g03050 1157 Gene3D - 64 222 IPR027417 -
Seca5g03050 1157 Gene3D - 225 312 IPR042197 -
Seca5g03050 1157 FunFam Probable disease resistance protein At1g61300 66 220 - -
Seca5g03050 1157 SUPERFAMILY L domain-like 395 1082 - -
Seca5g03050 1157 Coils Coil 1141 1157 - -
Seca5g03050 1157 Gene3D Ribonuclease Inhibitor 439 724 IPR032675 -
Seca5g03050 1157 Gene3D - 313 405 IPR036388 -
Seca5g03050 1157 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 943 1136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03050 Seca-Chr5 85385910 85392135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03050 91 410 WRKY Transcription Factor Family AT5G45050 24.465 3.94e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03050 - - mtr:25488990 1222.22