LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g03048	ATGGCCCCTCAAATCCATGACTTGTTAGCCATTTTCACCTTTTTTCTGTCCATGATTGTTGCACTTAAGATAAGGAACAATTTCAGAAAAACAGACTCAACTACGAATATACCTCCAGGGCCATGGAAGCTACCTATTATAGGAAATATTCCCCATCTTGTTGGTTCTCCACCACATAGAAAATTAAGAGAATTAGCAAAAAAATATGGACCCTTGATGCATTTGCAACTCGGTGAGATCTTCTTCATTGTTGTTTCCTCAGCAGAGTATGCTAAGGAGGTAATGAAAACTCATGATGTTATCTTTGCATCAAGGCCTCATCTTCTAGCCACAGACATTGTATCTTATGATTCCACAGATATAGCTTTTTCACCTTATGGTGATTACTGGAGACAGCTTAGGAAGATTTGTACTATAGAGCTTTTAAGCACAAAAAGGGTCAAATCTCTTTGGCCAATTAGAGAGGAAGAGATCAATACTCTCATCAAATGGATTGCTTCAAAAGAAGGATCACAAGTCAATCTTACTCAGGCAGTTATTTCAATGATTTATACATTCACTTCAAAGGCTGCTTTTGGTAAGACATATGCAGAACAAGAAGAGTTCATATCAGAGATGAAAAAACTTATAAATCTAGCTGGAGGTTTCTACACAGGAGACTTGTTTCCTTCAGCTAAATGGCTTCAAAACCTCTCTGGGATGAGGCCTAAACTTGAGAAGTTACACCAAAATGTAGACAGGACACTGGAGAAAATCATCAATGATCATAAAGAGGCAAGGTCAAGAGCTAAAGAAGATTTGGTTGAAGCTGAGGAAGATCTGGTTGATGTTCTCTTAAAATTTGATTTTCACTTAACTTCTAATAATATCAAGGCTATTATCTTGGATGTCTTCACTGCTGGGAGTGAGACTGCAGCAACTACCATTAACTGGGCAGTGGCTGAGATGATAAAGGATCCAAGAGTGTTGAAAAAAGCACAAGCTGAAGTGAGAGAGGTATTTGATAGGAGAGGAAGGATTGATGAAGCTGGCATTGAGGAGCTTAAATATTTGAAATCAGTCATCAAAGAATCCCTGAGATTACACCCTTCTGTTCCTCTTCTACTTCCAAGGGAATGTGGACAAGCCTGTGAGATTAATGGCTATCACATACCTGTCAAAAGTAGGGTCATAGTGAATGCTTGGACAATTGGAAGGGATCCAAAATATTGGAGTGAAGCAGAGAGGTTTTATCCTGAAAGGTTTATGGATAGCTCTATTGACTACAAAGGAACTAATTTTGAGTATATCCCATTTGGTGCTGGAAGGAGAATTTGTCCAGGCATGAACTATGGTATGGCAAATGTTGAGCAGGTTCTTGCATTGATATTGTATCATTTTGATTGGAGGCTTCCCAATGGAATGAAAAATGAGGACTTTGACTTGACAGAGGAATTTGGAATTACTGTGACAAGAAAAGGTGACCTATACTTGATTCCTATAGCTTCTCATAATTCTTTGCTTGCAACATAA	1512	0.3843	MAPQIHDLLAIFTFFLSMIVALKIRNNFRKTDSTTNIPPGPWKLPIIGNIPHLVGSPPHRKLRELAKKYGPLMHLQLGEIFFIVVSSAEYAKEVMKTHDVIFASRPHLLATDIVSYDSTDIAFSPYGDYWRQLRKICTIELLSTKRVKSLWPIREEEINTLIKWIASKEGSQVNLTQAVISMIYTFTSKAAFGKTYAEQEEFISEMKKLINLAGGFYTGDLFPSAKWLQNLSGMRPKLEKLHQNVDRTLEKIINDHKEARSRAKEDLVEAEEDLVDVLLKFDFHLTSNNIKAIILDVFTAGSETAATTINWAVAEMIKDPRVLKKAQAEVREVFDRRGRIDEAGIEELKYLKSVIKESLRLHPSVPLLLPRECGQACEINGYHIPVKSRVIVNAWTIGRDPKYWSEAERFYPERFMDSSIDYKGTNFEYIPFGAGRRICPGMNYGMANVEQVLALILYHFDWRLPNGMKNEDFDLTEEFGITVTRKGDLYLIPIASHNSLLAT.	504

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g03048	503	Coils	Coil	253	280	-	-
	Seca5g03048	503	PRINTS	P450 superfamily signature	300	317	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Seca5g03048	503	PRINTS	P450 superfamily signature	353	364	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Seca5g03048	503	PRINTS	P450 superfamily signature	430	439	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Seca5g03048	503	CDD	CYP71-like	68	489	-	-
	Seca5g03048	503	FunFam	Cytochrome P450 71D8	30	493	-	-
	Seca5g03048	503	PRINTS	E-class P450 group I signature	66	85	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Seca5g03048	503	PRINTS	E-class P450 group I signature	393	417	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Seca5g03048	503	PRINTS	E-class P450 group I signature	289	306	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Seca5g03048	503	PRINTS	E-class P450 group I signature	439	462	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g03048	Seca-Chr5	85365663	85367464	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g03048	39	493	Cytochrome P450	AT3G26310	42.766	3.58e-136	401

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g03048	-		-	gmx:102665189	708.753

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