Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03044 ATGGCGATTTCTTCTCTCTCAGCAACATTTGTTCTTCCTCTTTCTATTTCCAATTCTTCCCCCTCGCCCTCTTCCAAGCTAAAGTCCCCATCTTTATGCTTTCTCTCTGGTAACACCTTGAGACTTACAAGCCCAAAACCTCTGCACTCATCAACTAAGGTTTATGCTGCTCCAGAAGTGTTGGATTCCCCTGAATCCGTAGACCCACCACCGGAAACCCTAGATGATGAGTCTGAACCCAGCACCTTTCAGGTTGGTGACTTGGGGACTCCAAGCACTTCGTCAATTAGCATTGGGGCTGATGCAGATACGATGGCACCAAAGCAAAAAATTAGAATCAAGCTTAGATCTTATTGGGTGCCCTTGATAGAGGATTCCTGCAAGCAGATATTGGATGCAGCAAGGAATACCAATGCAAAAACGATGGGTCCTGTGCCTTTACCAACCAAGAAGCGAATTTACTGTGTTCTTAAATCCCCACATGTACATAAAGATGCCCGGTTCCATTTCGAGATCAGAACTCATCAGCGTCTCATTGATATTCTACATCCTACGGCTCAAACAATAGATTCTCTGATGCAACTTGATCTTCCTGCTGGTGTTGATGTGGAGGTCAAGCTCTAA 624 0.4503 MAISSLSATFVLPLSISNSSPSPSSKLKSPSLCFLSGNTLRLTSPKPLHSSTKVYAAPEVLDSPESVDPPPETLDDESEPSTFQVGDLGTPSTSSISIGADADTMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILHPTAQTIDSLMQLDLPAGVDVEVKL. 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03044 207 ProSitePatterns Ribosomal protein S10 signature. 134 149 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Seca5g03044 207 PRINTS Ribosomal protein S10 family signature 145 160 IPR001848 GO:0003735|GO:0005840|GO:0006412
Seca5g03044 207 PRINTS Ribosomal protein S10 family signature 110 123 IPR001848 GO:0003735|GO:0005840|GO:0006412
Seca5g03044 207 PRINTS Ribosomal protein S10 family signature 166 180 IPR001848 GO:0003735|GO:0005840|GO:0006412
Seca5g03044 207 Gene3D Ribosomal protein S10 domain 99 207 IPR036838 -
Seca5g03044 207 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 44 207 IPR001848 GO:0003735|GO:0005840|GO:0006412
Seca5g03044 207 FunFam 30S ribosomal protein S10 105 207 - -
Seca5g03044 207 Pfam Ribosomal protein S10p/S20e 112 206 IPR027486 -
Seca5g03044 207 SUPERFAMILY Ribosomal protein S10 110 207 IPR036838 -
Seca5g03044 207 SMART Ribosomal_S10_2 112 206 IPR027486 -
Seca5g03044 207 Hamap 30S ribosomal protein S10 [rpsJ]. 108 207 IPR001848 GO:0003735|GO:0005840|GO:0006412
Seca5g03044 207 MobiDBLite consensus disorder prediction 54 89 - -
Seca5g03044 207 NCBIfam 30S ribosomal protein S10 109 206 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03044 Seca-Chr5 85296081 85299316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03044 109 207 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 31.000 4.24e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03044 K02946 - gmx:100306286 324.709