Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03041 ATGGGAAAGGGAGAGAAACATTACATTGCTTATTTAGAGGATATGTATGAAGACAGGAGGGGGCAGAAGAAGGTTAAAGTGAGGTGGTTTCACCATAATCAGGAAGTCAAGGGTGCACGAAATCCTCACCCTCGGGAAGTTTTTATCACACCATATTCTCAAGTCATTAGTGCAGAGTGTGTAGATGGTCCTGCCACGGTCTTAACTCGTGAACACTATGAAAAATGCATGCCTTCCTTTTCCCCCACTTCAACAGACAGAATACATTTGTGCTTTAGGCAATTTAAAGGCAACAAAGTAAAGCCCTTTGACTTGAGTAAACTGCGTGGCTACTATGCTCAACCAGTTCTTTCTTGCTTGCACCTTGATACTATCCAGAACACTGATTCTAAGAGCAACAGCCTCACAGGAGATGATGAAGATTTGAATATAAGTGATGATACAAAGCTGGGAGCCAAGAGGAGCAGAAGTGATAAGGGGTCTCCTCAGTCTCGGATAGGTCGACAGGGAGTTAGAAAGTTAGTTAGAAGTAAGCAAATGATGGTATACGAAACCTTCCAGGTTGTAAATTATGCTAGGCCAGATAGGAGATTGTTTTCTCTAAAGCAGATTGAATGTCAACCTATGTATAACCCCACATACAAGGTTGATGACAAGATAGAGTTGCTTTGTCAAGATAGTGGCATCAGAGGCTGCTGGTTCAGGTGTACAGTTGTGCAGGTAGCCCGGAAACAACTGAAAGTCCAATATGATGATGTTCAGGATGAAGATGGAAGTGGAAATCTTGAGGAATGGATCCCTGCTTTCAAGTTGGCCAAGCCTGATAAACTTGGGATGAGGCATTCTGGCCGGCCCACCATCAGGCCAGCTCCAACTTATGAGGAACAGGAGCTGGCCATTGAGGTTGGAACTGCAGTTGATGCATGGTGGAGTGATGGCTGGTGGGAGGGGGTTGTAACTAGAAATGACAACTGCGGTGATGATAGTGTTCAAGTCTACTTTCCTGGTGAAAGCTTGCTAAAGAAAGTGCGCAAGAAGGATTTAAGAATATCTAGAGATTGGTTAGGGGACAAGTGGATTAATATTAAGTCAGAGCCTGATATAACCTCAACTATATTTACTGATAATAACTTTAACACAAAGCTTTCCATGTCCCCATCTAAGGCTAAAGATGTGGACTCTGTTGGTTTTGCTAATTCATGTCATGACATTCTTCCTAGTAAGAATTCTAATGAACTTGATGCTGAAGAGAAATTTGTGAGTTGTGATGGTGTTGCTGAAGATGGGGACTGTGTTCATGATAATAAACCCCCTTCAGAAAAAAGTACCCAAGTTGATGATGTTGAGATAGGTGGCAGTTGTGATAATGAAGATTATGGTGGTGATAATGATAAGGACAACAATGATAATGGTGACAACAAGAATTGTAATAATGATAATATGGATGTGGAGGTGTCAGGAACATCTGGACCGGACTGTAAAGCTGTAGAACTCATGGAAGTGGATGTGTAA 1512 0.4213 MGKGEKHYIAYLEDMYEDRRGQKKVKVRWFHHNQEVKGARNPHPREVFITPYSQVISAECVDGPATVLTREHYEKCMPSFSPTSTDRIHLCFRQFKGNKVKPFDLSKLRGYYAQPVLSCLHLDTIQNTDSKSNSLTGDDEDLNISDDTKLGAKRSRSDKGSPQSRIGRQGVRKLVRSKQMMVYETFQVVNYARPDRRLFSLKQIECQPMYNPTYKVDDKIELLCQDSGIRGCWFRCTVVQVARKQLKVQYDDVQDEDGSGNLEEWIPAFKLAKPDKLGMRHSGRPTIRPAPTYEEQELAIEVGTAVDAWWSDGWWEGVVTRNDNCGDDSVQVYFPGESLLKKVRKKDLRISRDWLGDKWINIKSEPDITSTIFTDNNFNTKLSMSPSKAKDVDSVGFANSCHDILPSKNSNELDAEEKFVSCDGVAEDGDCVHDNKPPSEKSTQVDDVEIGGSCDNEDYGGDNDKDNNDNGDNKNCNNDNMDVEVSGTSGPDCKAVELMEVDV. 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03041 503 MobiDBLite consensus disorder prediction 142 161 - -
Seca5g03041 503 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 213 422 - -
Seca5g03041 503 SMART agenet_At_2 212 277 IPR014002 -
Seca5g03041 503 SMART agenet_At_2 298 356 IPR014002 -
Seca5g03041 503 CDD Tudor_Agenet_FMRP-like_rpt2 302 349 - -
Seca5g03041 503 CDD Tudor_Agenet_AtDUF_rpt1_3 214 291 - -
Seca5g03041 503 Pfam BAH domain 5 91 IPR001025 GO:0003682
Seca5g03041 503 Pfam Agenet domain 217 291 IPR008395 -
Seca5g03041 503 Gene3D - 2 107 IPR043151 -
Seca5g03041 503 MobiDBLite consensus disorder prediction 130 169 - -
Seca5g03041 503 MobiDBLite consensus disorder prediction 430 492 - -
Seca5g03041 503 ProSiteProfiles BAH domain profile. 1 106 IPR001025 GO:0003682
Seca5g03041 503 MobiDBLite consensus disorder prediction 458 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03041 Seca-Chr5 85266178 85268878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03041 226 354 PHD Transcription Factor Family AT5G58610 31.111 1.17e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03041 - - gmx:100809407 758.059