Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03027 ATGGACGAAGGTGAGGGAGGGTACGGTGAGAGCGGGGATCCCGTGGATCAGTTCCATCGTAACGAAGCTATTTCCGCCGTTGCCGACGAGGGTTTCCTGGGTGAAGAGGACGACGATTACGAGGATCTCTACAACGATGTTAATGTCGGCGAAGGGTTCCTTCAATCCTTGCGCAAGAACGAGGATTCAGGGTTTAGAAACGAGGACGTTGACGACAAGAAGCCGCCGCCGCCAGTGCAGGATGCCGGTGGGGTTTCGATTCCGGGTGTCGGTGGCAGCGGTGGTGCTGGGGAGGGTGGCGGCGGCGGCGGGGTTGTGGAATCGAGGGTCTCTGGGAGAGTTGATGGGTTTCAGAATCAGGGGTTTAGAGGGAATGAGGTTGGTGTCAAAGGGGGCGGTGGAGGCGGGATTAGGGTTGAATTAGGTCACCAATCTGCGAAATTGAATGAGATTGAGGAGCAGAGTGGTAATGATGGTAGTGGAGTTCAGGGGATTGGGGAGCAACCGCATGGTGGAGTTGCTGGGAGTGTAGGAAATGAGGGTTCGGTGAGACAAGGTCAAGGTGGTGGTGGTGGTGGAGGGGGAAATCTTAACAGGGCTGGTGGTAATGGGGTTGGGAATAGTGTCAGTGTTGTTAATACTGGAGGAGGTGGAGTTGGAAGTGGTGTGGCTGCAGGTGCAGGTGGCGGTGGTGGTGGTACTGTATTATTTGTAGGTGATTTACACTGGTGGACTACTGATGCTGAGCTGGAAGATGAGCTTTGTAAGTATGGGCAAGTGAAGGAGGTGAAGTTTTTTGATGAAAAAGCCAGTGGGAAATCAAAAGGGTATTGCCAGGTTGAGTTTTATGATCCTGGTGCTGCAACTGCTTGTAAAGAAGGGATGAATGGGCATGTGTTTAATGGGAGGCCTTGCGTTGTTGCTTATGCTTCTCCTTTTACTGTGAAGAAAATGGGAGAGGCTCAGATAAGTAGGAATCAGCAGATGAACCAATCTGCAACTAACCAGGGAAGAAGGGGCCCTGGTGATGCTGGGGCTAAGCCTGGTGGTAGTAATGTTGGGACGGGCGGTAACTACCAAGGTGGAGATGGCAATAGAGGTTATGGAAGAGGTAACTGGGGGAGGGGGAATAATCCTGGGATGGGGAATAGAGGGCCTGTTAATCCAATGAGGAATAGGGGTGGTGGGATGGGTGGTAGAGGTATAATGGGTAATGGTGGAAATGGATTTGGACAGGGTATTGGTGCTACCCCGCCTATGTTGCATCCTCAGTCAATGATGAATCAGGGTTTTGATCCTGCATTTGGTGGTCCCATGGGTAGAATGGGCAGCTATGGAGGCTTTCCAGGTGCTCCAACACCTCCATTCTCTGGGATTTTGCCTTCATTCCCTGGTGTTGGAGGTGTTGGTTTGCCTGGAGTTGCACCTCATGTTAATCCAGCCTTTTTTGGTAGAGGGATGCCTGTGAATGGTATGGGTATGATGCCCACATCAGGTATTGATGGTCCTAATATGGGGATGTGGTCGGATCCAAATATGGGTGGATGGGGTGGTGAAGAACCTGGTGGTGGCAAGGCTGGAGAGTCAAGTTATGGGGAGGAAGCTGCATCAGACCATCAGTATGGTGAGGTTAGTCATGATAGAGCAGGGTGGCCTAATGCTATGAGGGAAAAAGATAGAGGATCAGAAAGGGACTGGTCCGGTTCTTCTGAAAGAAGGTACAGGGATGATAGAGATCAAGGATATGAGAGAGATGCACCTAGAGAGAAAGATATGGGACATGACCATGAATGGTCAGAAAGAAGGCACCGTGATGATAGAGAGATGGGTCGAGAACGATCTCGTGATCGTGATCGGGGACGATCTCGTGACCGTGACCGTGAAAGGGATCGGGATCGAGACCATGAACGGGACAGGTATAGGGAAGATAGGGACAGGTATGCTGATCATCATAGGTACAGGGACCGTGAAGCCGAGCATGATGAGGAGTGGGAGAGGGGACGGTCATCAAGGACTCACAGCAAATCACGATTATCGCATGAGGAGGAACACCATTCTAGACCAAGAGATGCTGATTATGGGAAGAGGAGGCGGCTTACCTCCGAATAA 2109 0.513 MDEGEGGYGESGDPVDQFHRNEAISAVADEGFLGEEDDDYEDLYNDVNVGEGFLQSLRKNEDSGFRNEDVDDKKPPPPVQDAGGVSIPGVGGSGGAGEGGGGGGVVESRVSGRVDGFQNQGFRGNEVGVKGGGGGGIRVELGHQSAKLNEIEEQSGNDGSGVQGIGEQPHGGVAGSVGNEGSVRQGQGGGGGGGGNLNRAGGNGVGNSVSVVNTGGGGVGSGVAAGAGGGGGGTVLFVGDLHWWTTDAELEDELCKYGQVKEVKFFDEKASGKSKGYCQVEFYDPGAATACKEGMNGHVFNGRPCVVAYASPFTVKKMGEAQISRNQQMNQSATNQGRRGPGDAGAKPGGSNVGTGGNYQGGDGNRGYGRGNWGRGNNPGMGNRGPVNPMRNRGGGMGGRGIMGNGGNGFGQGIGATPPMLHPQSMMNQGFDPAFGGPMGRMGSYGGFPGAPTPPFSGILPSFPGVGGVGLPGVAPHVNPAFFGRGMPVNGMGMMPTSGIDGPNMGMWSDPNMGGWGGEEPGGGKAGESSYGEEAASDHQYGEVSHDRAGWPNAMREKDRGSERDWSGSSERRYRDDRDQGYERDAPREKDMGHDHEWSERRHRDDREMGRERSRDRDRGRSRDRDRERDRDRDHERDRYREDRDRYADHHRYRDREAEHDEEWERGRSSRTHSKSRLSHEEEHHSRPRDADYGKRRRLTSE. 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03027 702 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 234 312 IPR000504 GO:0003723
Seca5g03027 702 MobiDBLite consensus disorder prediction 325 389 - -
Seca5g03027 702 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 236 305 IPR000504 GO:0003723
Seca5g03027 702 MobiDBLite consensus disorder prediction 55 109 - -
Seca5g03027 702 SMART rrm1_1 235 308 IPR000504 GO:0003723
Seca5g03027 702 MobiDBLite consensus disorder prediction 61 76 - -
Seca5g03027 702 CDD RRM_CFIm68_CFIm59 236 309 - -
Seca5g03027 702 MobiDBLite consensus disorder prediction 1 23 - -
Seca5g03027 702 MobiDBLite consensus disorder prediction 539 702 - -
Seca5g03027 702 MobiDBLite consensus disorder prediction 501 702 - -
Seca5g03027 702 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 20 635 IPR034772 -
Seca5g03027 702 MobiDBLite consensus disorder prediction 153 200 - -
Seca5g03027 702 Gene3D - 230 371 IPR012677 -
Seca5g03027 702 SUPERFAMILY RNA-binding domain, RBD 233 340 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03027 Seca-Chr5 84921219 84928325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03027 214 310 Eukaryotic Initiation Factors Gene Family AT4G34110 31.068 1.75e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03027 K14398 - gmx:100813748 875.159