Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03019 ATGCGAGACAAGAATGTCGTTTCAATTACAAGTGTGACAAAAATCATGAGACAAATTCTTCCATTAAATGCAAAAATCTCAGATGATGTTAAGGAGATGGTTCAAAAAAGTGTTTCAAAGTACATAAGCTTTGTAACTAGAAAAGCCATGGAGCGATGCCAAAGCGAGTGCAGAAAGATCATGAAAGTAGAGGACCTGTTATGGGGCTTAGAGAATCTAGGATTTTCTTACTATATTCAGCCACTCACTCTTTATCTTCAACGCTATCGCCAAATTCAAAGTGACCTCCAAAAACCTCGTGAAGAGCTTATTTCAACAAATGCAGAGCAAAGCATGGACAATAATGGGTCTTTTTCCATGCCTAGTGTTGGGGATCCTCAGCTAACCTTACCACCACCTACTTCTTTTGGGCCAAATTTTTTGAATGATCCATATGCAAATTTGGAAATTTTAGATTCAATGAGTTTGGATGATTTCGATGGAGTAGGATTAGATGTTGGCTACTCAGACAATGCTTTGACCAACTTTGATCCTTTTGCTCACTTCAATGAAGATGGCCTGTGA 564 0.3848 MRDKNVVSITSVTKIMRQILPLNAKISDDVKEMVQKSVSKYISFVTRKAMERCQSECRKIMKVEDLLWGLENLGFSYYIQPLTLYLQRYRQIQSDLQKPREELISTNAEQSMDNNGSFSMPSVGDPQLTLPPPTSFGPNFLNDPYANLEILDSMSLDDFDGVGLDVGYSDNALTNFDPFAHFNEDGL. 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03019 187 PRINTS CCAAT-binding transcription factor subunit A signature 34 52 - -
Seca5g03019 187 PRINTS CCAAT-binding transcription factor subunit A signature 53 71 - -
Seca5g03019 187 PRINTS CCAAT-binding transcription factor subunit A signature 72 90 - -
Seca5g03019 187 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 9 68 IPR003958 -
Seca5g03019 187 SUPERFAMILY Histone-fold 9 106 IPR009072 GO:0046982
Seca5g03019 187 Gene3D Histone, subunit A 2 118 IPR009072 GO:0046982
Seca5g03019 187 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 5 107 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03019 Seca-Chr5 84754878 84755441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03019 9 142 CCAAT-HAP3 Transcription Factor Family AT1G21970 47.059 1.07e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca5g03019 CBFD_NFYB_HMF 7e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03019 K08065 - zju:107433691 119.398