Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03018 ATGCCCTTCCTCCAATCTTGGACACCTACCAACCAAGTCATGTCTCCGACAACCACCATCTTGCTCTTCTTCTTCTTCTTCTTACCCTCAATCACACTTTCACAGAACATTACCTTCAACTTCCCCTCCTTCACTCTCCGCAACATCACCCTCCTCGGCGACTCCTTCCTCCGTGACGGCGTCGTCGGCCTCACCCGCTCCACCGCCGTCCCTGCCTCCAGCTCCGGCGCCCTCCTCTACAACAACCCCATCATCTCCAACGCCACCTCTTCCTTCTCCACCACCTTCTCTTTCTCCATCACCAACGCCACCTCTCCCTCCTCCTCCGGCGACGGCTTCGCCTTCTTCCTTTCCCCACACAACAACAACCTTTCCGAAACCCCCGGCGCATTCCTCAACTCCTCCCAACCCACCCACTTCATCGCCGTCGAGTTCAACACCAACGACAACCACGTTGGTTTGAACTTAAACTCCCAAACCAGTGATCCAACTTTGCAGGACATCGATCTCAAAAGCGGGAACTTGATCACCTCTTGGGTTGATTACGATGGTGTTAAGAAAAGCCTCAGTATTTTCTTAAGCTATTCCAATTCAAGTTCGAGTTTGAGTCCTTCCAAGCCTGAAAAACCGATCTTGAGCGTTGATATTGATATTTCTGAGTATTTCAAGGAGATTCTCTATGTGGGGTTTTCGGGTTCTACTGAAGGAAGCACCGAACTTTACCAAATCATGAGTTGGAGCTTTGAGTCGTTTCAGCTTCTCGTTCCTCAAAAACCAAACTTGCAAGTGAATCCTCGAAATGACTCTGGCAACCCCCATAGTGTTGCAGTGGAGGATATTCCTGCTTCAAACTCCACCAGTAACCATCATGGAAAGAGATTCGCAATTGGTTTTTGTGTTGCAATTGTTGGTCCTGCTTTTTTCTGTGTTTTGCTTTTGGTTTTGGGGTATGTTTCTTTTCGGAATCGGAGTGGAACAAGCTTTGTGGCGTGTCCTAAGGAGTTTAGTTACAAGGAGTTGAAATCAGCAACAAGAGGGTTTCATGTTTCGAGGATCATTGGGAATGGATCTTTTGGGACGGTGTATAAGGCCGTGTTTGGGAATGGATCTTCTGGAACAATTGCTGCAGTGAAAAGATCAAGGCATTCCCATGAGGGGAAAACAGAGTTCCTGGCTGAGCTTTCCATAATAGCTGGTTTGAGGCACAAGAATTTGGTTCAGCTCTTAGGTTGGTGTGTTGAGAAAGGTGAATTGTTGCTTGTGTATGAGTTTATGCCTAATGGAAGCTTAGATAAGTTTCTTCACCAAGGATCTGAATGTGGTGGCAATTTCTTGAGTTGGTTTCAAAGACATAACATTGTTGTTGGGTTAGCTTCTGTTCTGGCTTATTTGCACCAAGAATGTGAGCAAAGAGTAATTCACAGAGACATTAAGACAGGGAACATATTGCTAGATGGAAATTTCAATCCAAGGTTAGGGGATTTTGGTTTGGCAAAGCTTATGGATCATGATAAGAGCCCAGTTTCCACATTAACTGCTGGAACAATGGGGTACCTTGCTCCTGAGTATCTCCAATATGGAAAGGCAACTGATAAAACTGATGTGTTTAGCTATGGAGTGGTTGTGCTTGAAGTTGCTTGTGGTAGGAGGCCAATTGAAAGAGAGGGACAAAAGATGGTGAATTTAGTGGATTGGGTTTGGGGGCTTCACTCTCAAGGGAAGATAATTGAGGCTGCAGATAAAAGGTTGAATGGGGAGTTTGAAGAAGAGGAAATGAGGAAGCTTTTGCTTTTGGGGTTGAGTTGTGCAAACCCAGATAGTGCAGAAAGGCCTTCCATGAGAAGGGTATTACAGATTCTCAACAATGAAACTGTGCCTCTTGTAGTGCCTAAAGTGAAACCAAGCCTTACATTCTCTTCTGGCCTTCCATTGACTCTTGATGAGATAGTTTCAGATACTGAGGAAGGGTTCAATTGCAGCCAGCATGTGTGCCAGATAAAAATTGACTGA 2010 0.4562 MPFLQSWTPTNQVMSPTTTILLFFFFFLPSITLSQNITFNFPSFTLRNITLLGDSFLRDGVVGLTRSTAVPASSSGALLYNNPIISNATSSFSTTFSFSITNATSPSSSGDGFAFFLSPHNNNLSETPGAFLNSSQPTHFIAVEFNTNDNHVGLNLNSQTSDPTLQDIDLKSGNLITSWVDYDGVKKSLSIFLSYSNSSSSLSPSKPEKPILSVDIDISEYFKEILYVGFSGSTEGSTELYQIMSWSFESFQLLVPQKPNLQVNPRNDSGNPHSVAVEDIPASNSTSNHHGKRFAIGFCVAIVGPAFFCVLLLVLGYVSFRNRSGTSFVACPKEFSYKELKSATRGFHVSRIIGNGSFGTVYKAVFGNGSSGTIAAVKRSRHSHEGKTEFLAELSIIAGLRHKNLVQLLGWCVEKGELLLVYEFMPNGSLDKFLHQGSECGGNFLSWFQRHNIVVGLASVLAYLHQECEQRVIHRDIKTGNILLDGNFNPRLGDFGLAKLMDHDKSPVSTLTAGTMGYLAPEYLQYGKATDKTDVFSYGVVVLEVACGRRPIEREGQKMVNLVDWVWGLHSQGKIIEAADKRLNGEFEEEEMRKLLLLGLSCANPDSAERPSMRRVLQILNNETVPLVVPKVKPSLTFSSGLPLTLDEIVSDTEEGFNCSQHVCQIKID. 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03018 669 ProSitePatterns Protein kinases ATP-binding region signature. 353 378 IPR017441 GO:0005524
Seca5g03018 669 Gene3D Transferase(Phosphotransferase) domain 1 425 634 - -
Seca5g03018 669 SMART serkin_6 347 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03018 669 CDD lectin_legume_LecRK_Arcelin_ConA 39 251 IPR001220 GO:0030246
Seca5g03018 669 SUPERFAMILY Concanavalin A-like lectins/glucanases 37 254 IPR013320 -
Seca5g03018 669 Gene3D - 34 251 - -
Seca5g03018 669 CDD STKc_IRAK 353 622 - -
Seca5g03018 669 Gene3D Phosphorylase Kinase; domain 1 319 424 - -
Seca5g03018 669 SUPERFAMILY Protein kinase-like (PK-like) 325 620 IPR011009 -
Seca5g03018 669 Pfam Legume lectin domain 37 251 IPR001220 GO:0030246
Seca5g03018 669 PANTHER - 64 624 - -
Seca5g03018 669 Pfam Protein kinase domain 347 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03018 669 FunFam L-type lectin-domain containing receptor kinase VIII.1 425 638 - -
Seca5g03018 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Seca5g03018 669 ProSiteProfiles Protein kinase domain profile. 347 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03018 Seca-Chr5 84734729 84736738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03018 14 656 Receptor kinase-like Gene Family AT5G55830 56.851 0.0 722
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca5g03018 Pkinase 1.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03018 - - adu:107496163 795.808