Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03002 ATGAAGAAGAAAGGGGTAGATGAGTTCCCGTTCTGCGTGCACCTGGTGTCATGGGAGAAGGAGAACGTTTCGAGCGAGGCACTGGAAGCGGCACGTATAGCATGCAACAAGTACATGTCGAAGTTCGCGGGGAAGGACGCGTTCCACCTGCGCGTGAGGGTGCACCCCTTCCATGTGCTGCGCATCAACAAGATGCTATCGTGCGCAGGGGCGGATAGGCTCCAAACAGGGATGAGAGGTGCGTTTGGGAAACCTCAGGGGACGTGTGCTAGGGTTAACATTGGTCAGGTTCTTCTCTCCGTTCGGTGTAAGGATAGTAACGGGAATCACGCTCAGGAGGCTCTGCGTCGTGCCAAGTTCAAGTTCCCCGGTCGCCAGAAAATCATTATCAGCCGAAAGTGGGGATTTACTAAGTTGAGCCGAGCTGACTATTTGAAGTTGAAGTCTGAGAACAGAATTATGTCGGATGGAGTCAATTGCAAGGTTTGTATCTACTACGATATGACTATAATTATCATTTTATGTATGGTTTCGGAAAAAAGTTACAGCAATGTGATTCATGGTTTGTTGGATATATTTAAGGGAGCTTGGAGATTTTTTTACTATATTTTGGACGGATCAGGGGATTGA 630 0.4794 MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVNIGQVLLSVRCKDSNGNHAQEALRRAKFKFPGRQKIIISRKWGFTKLSRADYLKLKSENRIMSDGVNCKVCIYYDMTIIIILCMVSEKSYSNVIHGLLDIFKGAWRFFYYILDGSGD. 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03002 209 FunFam 60S ribosomal protein L10 1 165 - -
Seca5g03002 209 Gene3D Ribosomal protein L10e/L16 1 141 IPR036920 GO:0003735|GO:0005840|GO:0006412
Seca5g03002 209 PANTHER 60S RIBOSOMAL PROTEIN L10 1 163 IPR001197 GO:0003735|GO:0005840|GO:0006412
Seca5g03002 209 FunFam 60S ribosomal protein L10, putative 138 164 - -
Seca5g03002 209 CDD Ribosomal_L16_L10e 4 129 IPR016180 GO:0003735|GO:0005840|GO:0006412
Seca5g03002 209 Gene3D - 142 164 - -
Seca5g03002 209 Pfam Ribosomal protein L16p/L10e 13 129 IPR016180 GO:0003735|GO:0005840|GO:0006412
Seca5g03002 209 ProSitePatterns Ribosomal protein L10e signature. 71 92 IPR018255 GO:0003735|GO:0005840|GO:0006412
Seca5g03002 209 SUPERFAMILY Ribosomal protein L16p/L10e 3 138 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03002 Seca-Chr5 84482368 84483829 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03002 1 161 Cytoplasmic Ribosomal Protein Gene Family AT1G26910 86.957 6.63e-104 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03002 K02866 - vvi:100241995 316.62