Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02992 ATGAATTCCCCATCTCCATCAGAGTTCTTGTTCAATTCAAGCAACATGGTTTCATTTCCTTCAAATTCTGGAGAAAATAGGCCTCCTAGTTCCTCCCCACCTTCATTTTTGACAAGGGTGGCCATGAGAATATCTAGATCAAGATGGTTCACCTTTTTAAGAAGAGTATTCCATTACCAAAATGGACCAAGATCTGATCTTGGTTCTAACCCTTTCAATTCTAGCACTTGGATGATGCTAGAGTTGATTGCTTTGATGGTACAAATAACCAGCACAACATTCACTTTGGCCATTTCAAAGAATGAGAAGCCTATTTGGCCTATGAGGATTTGGATAGCAGGTTATGACATTGGTTGTGTCCTTAATCTGTTGCTACTTTGTGGCCGCTACCATCAACTTCATGTGACTCAGGGGGAGGCTCTTAACCTCTCTGATGTGGAGCAGCAAAGAAACAATGAAGAAACAAGTGTGTACAGGAGCTCACGTTTGATGAGTAAATGCCGTAGTTCACTAGAGCTTTTCTTTGCCATATGGTTTGTGATGGGCAATGTTTGGGCTTTTGACTCACGTTTTGGATCCTTCCAACATGCTCCTAAACTCCACGTGCTCTGCATCATCCTTCTTGCTTGGAATGCAATCTGCTACTCTTTCCCTTTTCTACTGTTTTTGCTCCTTTGCTGTTGTGTGCCACTAGTTAGCACCCTCCTTGGATACAACATGAACATGGGTTCCTCTGCTAAAGGGGCATCCGAAGATCAAATCTCACAAATTCCAAGTTGGAGATATAAAGTGGCTCATACCAACTTAGACCTTAGCAATGATTCTGAGAGCAGTGAAAGATTGATCAATGAAGATCCGGAATGTTGCATTTGCTTAGCCAAGTACAAAGTCAAAGAAGAAGTTAGGCAATTACCCTGTTCACATTTGTTTCACCTAAAATGTGTGGATCAATGGCTAAGAATTATATCCTGCTGCCCACTTTGCAAACAAGGATTACAAAGGTAG 1005 0.4159 MNSPSPSEFLFNSSNMVSFPSNSGENRPPSSSPPSFLTRVAMRISRSRWFTFLRRVFHYQNGPRSDLGSNPFNSSTWMMLELIALMVQITSTTFTLAISKNEKPIWPMRIWIAGYDIGCVLNLLLLCGRYHQLHVTQGEALNLSDVEQQRNNEETSVYRSSRLMSKCRSSLELFFAIWFVMGNVWAFDSRFGSFQHAPKLHVLCIILLAWNAICYSFPFLLFLLLCCCVPLVSTLLGYNMNMGSSAKGASEDQISQIPSWRYKVAHTNLDLSNDSESSERLINEDPECCICLAKYKVKEEVRQLPCSHLFHLKCVDQWLRIISCCPLCKQGLQR. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02992 334 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 25 332 - -
Seca5g02992 334 SMART ring_2 288 328 IPR001841 -
Seca5g02992 334 Pfam RING-like zinc finger 287 315 IPR001841 -
Seca5g02992 334 SUPERFAMILY RING/U-box 279 332 - -
Seca5g02992 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 333 IPR013083 -
Seca5g02992 334 ProSiteProfiles Zinc finger RING-type profile. 288 329 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02992 Seca-Chr5 84410367 84413577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02992 22 332 C3H Transcription Factor Family AT4G26580 68.590 9.85e-148 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02992 - - gmx:100818715 576.244