Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02983 ATGCTTTGTGACACATATGTATTAGATTGTTGCATTTGTTCTGAACCTTTGAGTCATCCTGTCTTCCAATGCATCAATGGTCACATTGCTTGTGGTACATGCTGTTCCAAAGTTATGAATAAGTGCAACATGTGCCCTATGCCCATCCACATCCGTTGTCGTGCTATAGAGAAAGTGTTGGAATCTATCAAAATTGCATGTGATAATACAGAATATGGCTGTGATGTGATAGTGAGGTATAGTGAAAAACATGCACATGAGAAGACATGCATCTTCAAACCATGTTTATGTCCACATGTAGGTTGTGACCTTTTTACAGATTCCAAGGAGTTAGTCTTACATTTCAAGACAGAACATCAGCCCAGTGAACCACCCTTTAAATATGGTGAAGTTTTTGTTTCCTCATTATGTCCTAATGAGAATATTGTTGTTCTTCAAGCACTAGAAGATGACAAACTATTTGTCATCAACAACAAGGCTGAGTCTCTGCTGAACATACTCACTCTTTATCACATTGGGCCTAATACAGTGACATCAGAGTTTCATTTTAAAATGGTGGTTAGGTCTCAACAAGGGAATAACTCTATATTGCTAGAGTCAGAAGTTGAGAACATTCAAGACCTACAATCAGAAGGGGACAACATACAAGACTGCACTTCTGCATCATCATCAGGGTCCCTTTATGTTCCATTTCAATTTTTTCAACCTTGTGGACGAGTCATGTTAGAAATTTGCATAAGTATCATTGGTGCTGCATAG 759 0.3834 MLCDTYVLDCCICSEPLSHPVFQCINGHIACGTCCSKVMNKCNMCPMPIHIRCRAIEKVLESIKIACDNTEYGCDVIVRYSEKHAHEKTCIFKPCLCPHVGCDLFTDSKELVLHFKTEHQPSEPPFKYGEVFVSSLCPNENIVVLQALEDDKLFVINNKAESLLNILTLYHIGPNTVTSEFHFKMVVRSQQGNNSILLESEVENIQDLQSEGDNIQDCTSASSSGSLYVPFQFFQPCGRVMLEICISIIGAA. 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02983 252 SUPERFAMILY TRAF domain-like 62 203 - -
Seca5g02983 252 ProSiteProfiles Zinc finger SIAH-type profile. 62 120 IPR013010 GO:0008270
Seca5g02983 252 Pfam Seven in absentia protein family 51 220 IPR018121 GO:0005737|GO:0006511|GO:0007275
Seca5g02983 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 115 IPR013083 -
Seca5g02983 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 2 248 IPR044286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02983 Seca-Chr5 84300786 84301544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02983 7 120 C3H Transcription Factor Family AT2G41980 37.607 9.55e-19 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02983 K04506 - aew:130768762 208.764