Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02972 ATGCCACAGGAGAACTCATTTTTCACATCTCCTTCAAAGAGAGGATTGAAGGGTCTGGTCTCTCCCAACAAGGAAGCTTCATGCACTGCCAACGATCATGACTTGGCTCAGAGGAAAGCAGAGGAAGCAGCTTCAAGGAGATACCAAGCAACAGAATGGCTGCGGCAAATGGACCATGTTGCGTCAGCATCACTCTCCCCACAACCTTCCGAAGAAGAATTTTGCCTTGCACTCCGCAATGGCCTCATTCTCTGCAACGTCCTCAACAAAGTCAACCCCGGCGCTGTTCTCAAGGTGGTGGACAATCCTGCTCTCGCTGTTCAGTCTGCAGAGGGTGCAGCACACTCTGCGATTCAATATTTCGAGAACATGAGAAACTTTCTGGAGGCAGTCAAGGATATGCAGCTTTTGACATTTGAAGCATCCGATTTGGAGAAGGGGGGTTCATCAAATAAAGTTGTGGACTGCATTCTATGTTTGAAGGGGTTTTATGAATGGAAATTATCTGGTGGAGTTGGTGTGTGGAGGTATGGGGGAACTGTGAGGATTACTTCCTTCCCTAAGAGGTCTCCTTCCTCCATAGTTGGCAGTGAAAGTGCTGATGAATCACTGGACGAGTCAGAGTCATCACAGTATGAACAGCTGCTAGAATTTCTTAATCTATCTGAAGAGTTCTTGATTGAAGAAACCAGAACTGCCAATGCTCTGGCTTTCCTTTTTGATCACTTTGGACTCAGACTTCTTCAGGCTTACCTTAGAGAGACGGATGGGATTGAAGATCTGCCTCTGAATGCAATGGTGATTGACACCTTACTTGGCAAGGTAGTCAAGGATTTCTCTTCTTTGCTTGTTTCTCAAGGAACTCAGCTTGGACTTTTCCTGAAGAAAATATTGAAAGGTGATATTGGTTGTCTCTCAAAGAGAGAGTTTATAGAAGCTATCTCACTATATCTTAATCAAAAAAGGAGTTTGGCATCAAATGATTTCTCCAAATTCTGCATTTGTGGTGGCAAGCGTGATAGTATTCGACAAAATGTCAATTATTCTGCCAATTATGCTGAAGTCATCAATACTCAACACAAACAACTTGAGGGAATGAAATACTTCTTTGAAGAGACAAAATTGGAGGTCAAACAAATTCAATTGGAGTGGGAGCAAGAATGGAATAGGCTAGAACATCATATCAAGAGCCTTGAAGTGGCCTCCTCTTCCTACCACAAAGTTTTGGAGGAGAACCGTCTTCTTTACAATCAAGTACAAGACCTCAAAGGAGCCATTAGGGTCTATTGTAGAGTGAGACCCTTCTTACCAGGACAATCAAATGGACGGTCTACAGTAGACTATATTGGAGAAAATGGAGACTTGATGATTGTAAATCCCCTTAAGCAGGGAAAAGAAGCAAGAAGGGTATTTTCATTCAATAAGGTGTTTGGAACAAGTGTAACACAAGAACAAATTTATGCTGACACTCAACCATTGGTCCGGTCTGTGCTAGATGGTTATAATGTGTGCATCTTTGCATATGGACAGACGGGCTCAGGGAAGACCTACACAATGAGTGGCCCTGATCTGACGACTGAAGAGACATGGGGTGTAAACTATAGAGCTTTGCGTGACTTATTTCATATATCAAGGGAAAGGGCAGGTTCCATAAAATATGAAGTCTTTGTCCAGATGATTGAAATATACAATGAACAAGTGAGAGATTTATTGGTCAGTGATGGCTCTAACAGAAGATATCCTTTTAAGCAGTGCATCTATCATAATTCTTTTTTTCATGGATTTTTCAGTCCCTTAACAAGATATACATTAGATATACGAAACAATTCTCAACTGAATGGCCTCAATGTGCCTGATGCATTTTTAGTTCCGGTTACTTGTACTCAAGATGTTCTAGATTTAATGAGAATTGGTCAGAAGAATAGAGCTGTGGGAGCTACAGCTCTAAATGAGAGAAGCAGTCGTTCTCACAGTGTTTTGACTGTTCATGTTCGAGGCATGGAGTTAGTTTCTAACTCCGTTCTTAGGGGCTGTCTCCATCTTGTGGATTTGGCTGGTAGTGAGAGGGTTGACAAATCTGAGGCTGTTGGTGAGAGACTAAAGGAGGCCCAACATATAAATAGATCACTTTCAGCACTTGGGGATGTTATTTCTGCTTTGGCACAGAAAAGTCCACATATCCCTTACAGAAATAGCAAGCTCACACAAGTGTTACAAGATTCCTTAGGAGGGCATGCAAAAACTTTGATGTTTGTTCATATAAATCCTGAACTTAATGCTATTGGGGAGACAATAAGCACACTCAAGTTTGCTGAGAGGGTTTCATCCATTGAACTTGGGGCTGCTCAATCTAATAAAGAAACTGGGGAAATCCGAGAACTAAAGGAAGAGATATCAAGTCTCAAACTGGCATTAGAGAGGAAGGAAACAGAGCTGGAGCAATGGAAGGCTGGGATTGCTCGAAACACCATAGAATCTCAGAAACCAAGAGCTGTTTCACCTTTTCATCTGCCTAAATATGGTGCCAGTGGCAGCATGAAGCCTGAAACTAGTCAACGACTCATGGATGATAGAAACTTGGAGGCTAGAAGTTGCTCTTCGGGTAAGCAACGAAGGTCAAGGTTTCCCTCAACATTTATGGACAAGGACTCCATTCCCAAAATGTCTCCTCTGACTGAAGAAAAATTAGTGAGCTCCGGGAAGGGAAGATCACCATCACCTCCAGTTAGAAGATCATCATCCACTGATAGAGGGTCAGTCATTAAAAGCAAGGTCAAAACTGAAACAACAGACAACCTACCAATATTAAAGCATCCATTTCCAGCTAGAGTACCTGCTAACAAATCCCTTGTCCCAATGCCAATGGCTGCATCCCTTGACAATAACACAAAGGTGCATGTGAATTCACAAGAGCCAGTAAAGCAGGAAAGTTTTTCTGAAACACTGTTCAACCTCCAGAAGGTCAACAACTCCAGGAAAGTTCATCAAGAACATGAAGAGGAACAATTCAAGCAAGCACTTAGTGTAGTAAGACAAGGTGGTATTAGAAAAAGCAAGGTTGAAAGTAAGACTAAGGCCAAGCATCATCAACTATCACCCTTTAAGATTCAAAAGCCTGATTTGATCCCAACATTTATTTCTGACATGGAATTTGCTGGTGAAATGACTATAGAACCACCTCCAAAGAATGATAACTCTGAGCCTGAAAATGATCTTAGATTTATGGAGTCTGCTGCCCATGGTGCTTTAAATCTCAAAAAGATACGTCAGAATTTTCCAAGGAATTTTCAGAACCTTGAATCAAGAGGAATAATGCAAGCAGGAGAGCCTTTATTGGCTAGCAAAGTTGAAAACAAACCTTTGAATGGTTCAGGTAGCAATAACAAAGAGGGTAGTACTACACCCATGCCTGAATTTAGAAGGAGCCGATCTACCCCACGTGGAAAGTTTTTTGGTTTATCTTGA 3465 0.4185 MPQENSFFTSPSKRGLKGLVSPNKEASCTANDHDLAQRKAEEAASRRYQATEWLRQMDHVASASLSPQPSEEEFCLALRNGLILCNVLNKVNPGAVLKVVDNPALAVQSAEGAAHSAIQYFENMRNFLEAVKDMQLLTFEASDLEKGGSSNKVVDCILCLKGFYEWKLSGGVGVWRYGGTVRITSFPKRSPSSIVGSESADESLDESESSQYEQLLEFLNLSEEFLIEETRTANALAFLFDHFGLRLLQAYLRETDGIEDLPLNAMVIDTLLGKVVKDFSSLLVSQGTQLGLFLKKILKGDIGCLSKREFIEAISLYLNQKRSLASNDFSKFCICGGKRDSIRQNVNYSANYAEVINTQHKQLEGMKYFFEETKLEVKQIQLEWEQEWNRLEHHIKSLEVASSSYHKVLEENRLLYNQVQDLKGAIRVYCRVRPFLPGQSNGRSTVDYIGENGDLMIVNPLKQGKEARRVFSFNKVFGTSVTQEQIYADTQPLVRSVLDGYNVCIFAYGQTGSGKTYTMSGPDLTTEETWGVNYRALRDLFHISRERAGSIKYEVFVQMIEIYNEQVRDLLVSDGSNRRYPFKQCIYHNSFFHGFFSPLTRYTLDIRNNSQLNGLNVPDAFLVPVTCTQDVLDLMRIGQKNRAVGATALNERSSRSHSVLTVHVRGMELVSNSVLRGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSPHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPELNAIGETISTLKFAERVSSIELGAAQSNKETGEIRELKEEISSLKLALERKETELEQWKAGIARNTIESQKPRAVSPFHLPKYGASGSMKPETSQRLMDDRNLEARSCSSGKQRRSRFPSTFMDKDSIPKMSPLTEEKLVSSGKGRSPSPPVRRSSSTDRGSVIKSKVKTETTDNLPILKHPFPARVPANKSLVPMPMAASLDNNTKVHVNSQEPVKQESFSETLFNLQKVNNSRKVHQEHEEEQFKQALSVVRQGGIRKSKVESKTKAKHHQLSPFKIQKPDLIPTFISDMEFAGEMTIEPPPKNDNSEPENDLRFMESAAHGALNLKKIRQNFPRNFQNLESRGIMQAGEPLLASKVENKPLNGSGSNNKEGSTTPMPEFRRSRSTPRGKFFGLS. 1155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02972 1154 MobiDBLite consensus disorder prediction 1 42 - -
Seca5g02972 1154 MobiDBLite consensus disorder prediction 851 868 - -
Seca5g02972 1154 Coils Coil 784 818 - -
Seca5g02972 1154 MobiDBLite consensus disorder prediction 1119 1140 - -
Seca5g02972 1154 CDD CH_AtKIN14-like 46 161 - -
Seca5g02972 1154 PRINTS Kinesin heavy chain signature 727 748 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca5g02972 1154 PRINTS Kinesin heavy chain signature 500 521 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca5g02972 1154 PRINTS Kinesin heavy chain signature 678 696 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca5g02972 1154 PRINTS Kinesin heavy chain signature 647 664 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca5g02972 1154 ProSiteProfiles Calponin homology (CH) domain profile. 44 165 IPR001715 GO:0005515
Seca5g02972 1154 FunFam kinesin-like protein KIN-14F 36 165 - -
Seca5g02972 1154 Pfam Calponin homology (CH) domain 45 165 IPR001715 GO:0005515
Seca5g02972 1154 ProSiteProfiles Kinesin motor domain profile. 425 777 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca5g02972 1154 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 426 815 IPR027417 -
Seca5g02972 1154 MobiDBLite consensus disorder prediction 1116 1154 - -
Seca5g02972 1154 MobiDBLite consensus disorder prediction 905 927 - -
Seca5g02972 1154 Pfam Kinesin motor domain 431 777 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca5g02972 1154 MobiDBLite consensus disorder prediction 830 927 - -
Seca5g02972 1154 Gene3D - 36 164 IPR036872 -
Seca5g02972 1154 SUPERFAMILY Calponin-homology domain, CH-domain 38 192 IPR036872 -
Seca5g02972 1154 Gene3D Kinesin motor domain 368 779 IPR036961 -
Seca5g02972 1154 PANTHER KINESIN-LIKE PROTEIN KLP-3 51 960 IPR027640 GO:0003777|GO:0007018
Seca5g02972 1154 FunFam kinesin-like protein KIN-14F 420 818 - -
Seca5g02972 1154 SMART ch_5 46 163 IPR001715 GO:0005515
Seca5g02972 1154 SMART kinesin_4 423 785 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02972 Seca-Chr5 84219556 84230134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02972 416 777 Calmodulin-binding Proteins AT5G65930 39.782 1.43e-72 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02972 K10406 - gmx:100786466 1923.67