Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02971 ATGTTGGGTGACCCCAAGGAGGCAAGAGCAGGAATCACTGAGGTGCATTTCTTGCCCTTCAATCCTGTGGACAAGCGCACAACTATTACCTGCATTGATAGCAATGGTGACTGGCACAGAAGCAGCAAAGGTGCTCCTAAGCAAGTAAGGCTATATAACTCATATGCATCAATATAG 177 0.4633 MLGDPKEARAGITEVHFLPFNPVDKRTTITCIDSNGDWHRSSKGAPKQVRLYNSYASI. 59
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02971 58 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 3 49 IPR023299 GO:0000166
Seca5g02971 58 PANTHER CALCIUM-TRANSPORTING ATPASE 1 49 - -
Seca5g02971 58 Gene3D - 1 55 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02971 Seca-Chr5 84198293 84198553 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02971 1 49 Primary Pumps ATPases AT3G42640 87.755 9.61e-27 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02971 K01535 - aew:130792209 97.0561