Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02969 ATGTTTTTGTACTTCTGTTATGATGTATCATCAGATGCTTTTGATACTGAGGAATTGCTACATGTTATGGACAAGTTGAAGCGTGGCGAAGCTGTAGATATCCCGAAGTATGATTTTAAGAGTTACAAGAGTGATGTGTTAAGAAGGGTAAACCCTTCAGATGTTATAATTTTGGAAGGCATCCTTGTTTTCCATGATCCACGTGTTAGGGAGTTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGTTCGTTTGGCAAGAAGGATTAGGCGTGATACTGTTGAGAAGGGTCGGGATATTGGAACAGTTCTTGATCAGTATTCAAAATTTGTGAAGCCAGCTTTTGATGACTTCATTCTTCCAACAAAGAAGTATGCTGATATAATTATACCCCGTGGAGGAGATAATCATGTGGCCATTGATTTGATTGTACAGCATATCCGCACAAAGCTTGGTCAGCATGACCTCTGTAAAATATATCCAAACTTATATGTCATTCAGTCAACTTTTCAGATACGGGGTATGCATACCCTGATACGTGATGCTCAGACAACAAAGCATGATTTTGTATTTTATTCTGATCGTTTGATTCGATTGGTTGTAGAACATGGATTGGGACATCTTCCATTTACAGAAAAGCAAGTAATCACTCCCACTGATTCTGTATACACTGGTGTGGATTTTTGTAAGAGGTTGTGTGGTGTCTCTGTCATCAGGAGTGGGGAGAGCATGGAGAATGCTTTAAGAGCATGCTGTAAAGGTATCAAGATTGGGAAAATTTTAATTCACAGAGAAGGTGACAATGGTCAGCAGCTAATATATGAAAAGTTGCCAAATGATATCTCAGACAGGCATGTGTTATTGTTGGACCCTATCCTCGGCACAGGTAATTCGGCGGTTCAAGCAATTTCTTTACTTATAAAAAAGGGTGTACCAGAGTCCAACATTATATTTCTTAATCTGATATCTGCACCTAAAGGTGTGCATGTGGTCTGCAAAAGTTTTCCAAGAATTAAAATAGTGACATCTGAGATTGAGATTGGTTTGAATGAAGATTACCGCGTCATACCAGGAATGGGTGAGTTTGGAGATCGGTACTTTGGAACAGATGATGATGTTGAACAAGTGGTTGTTCCTTCACAGTAG 1152 0.3898 MFLYFCYDVSSDAFDTEELLHVMDKLKRGEAVDIPKYDFKSYKSDVLRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIGTVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDAQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTDSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLIKKGVPESNIIFLNLISAPKGVHVVCKSFPRIKIVTSEIEIGLNEDYRVIPGMGEFGDRYFGTDDDVEQVVVPSQ. 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02969 383 Pfam Uracil phosphoribosyltransferase 170 371 - -
Seca5g02969 383 SUPERFAMILY PRTase-like 155 372 IPR029057 -
Seca5g02969 383 FunFam Uridine kinase 156 371 - -
Seca5g02969 383 Gene3D - 7 155 IPR027417 -
Seca5g02969 383 PRINTS Uridine kinase signature 84 94 - -
Seca5g02969 383 PRINTS Uridine kinase signature 98 109 - -
Seca5g02969 383 PRINTS Uridine kinase signature 29 44 - -
Seca5g02969 383 PRINTS Uridine kinase signature 120 133 - -
Seca5g02969 383 Pfam Phosphoribulokinase / Uridine kinase family 10 140 IPR006083 GO:0005524|GO:0016301
Seca5g02969 383 CDD UMPK 12 152 IPR000764 -
Seca5g02969 383 CDD PRTases_typeI 229 344 IPR000836 -
Seca5g02969 383 FunFam Uridine kinase 4 155 - -
Seca5g02969 383 Gene3D - 156 371 IPR029057 -
Seca5g02969 383 PANTHER URIDINE KINASE 12 281 - -
Seca5g02969 383 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 145 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02969 Seca-Chr5 84172448 84176907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02969 12 374 PRT Gene Family AT4G26510 90.358 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02969 K00876 - gmx:100792258 712.605