Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02958 ATGAGCGATTCTGCATACAAGGTTGAAACCACACCTCGTCTTGCTCAATGGAGAATCGAAAACTTGGCTTCTTGCACATACCGCAAATCCGATCCTTTCAAGATCGGAAAGTGGAATTGGTATTTGTCGGTGGAGAAGAACAGGGTTTTGTTTGTTAAATTGTTCCCAGAAACATCCAATCTAACGAGAGAAAATCCCCCAATTGCATCTTTTATCGTTCGGGTGGTTAGTTCTGTTGGAGATCGCAAGGCCCTCACACATCCAGAAATAAAGGACAAATTGATCAAGAACAATGAGGACTTTGTTTGGGCAATTGAGGTTCCACTGACTGGGAAATTCATTATTGACGTTGAGTTCCTTGATTTGAAGACTACATCTCCAAACGGTGGAGAACCTTGCTCTATCTGGGCTGAAGGATTTACTCAGAAAAGATCAAATGCAAAAGCCATAGAGTCTCTTGGTAGAATGCTAATAGAAGGCATCCACACAGACATCACCATCAATGCTTCTGATGGAAGCATAGGTGCTCATCGAGCTGTTCTTGCTGCCAGGTCACCTGTATTCCGCAGCATGTTCTCACATAATCTTCAGGAGAAAGAGCTTTCAACTATAAACATCTCAGACATGTCAATTGAAGCTTGCCAAGCTTTTCTCAATTATCTTTATGGCATCATAAAAAATGAAGAATTTCTCACACATAGGCTTGCCCTTCTACATGCAGCTGACAAGTATGACATATCTGACTTGAGAGAGGCATGCCATGAGAGTCTTCTAGAAGACATTGATACAAAAAATGTACTTGAGAGGCTCCAAAATGCATCACTATATCAGTTGATGAAGCTTAAGATGAGCTGTATCCGATATCTTGTGAAATTTGGTAAAATATTTGAAATTAAGGATGATTTCAATACCTTCCTGCAAAATGCAGACAGGGATCTCATTGCTGAAGTCTTCCATGAAGTTCTTGATGCATGGAAAGGATTCTGA 987 0.4063 MSDSAYKVETTPRLAQWRIENLASCTYRKSDPFKIGKWNWYLSVEKNRVLFVKLFPETSNLTRENPPIASFIVRVVSSVGDRKALTHPEIKDKLIKNNEDFVWAIEVPLTGKFIIDVEFLDLKTTSPNGGEPCSIWAEGFTQKRSNAKAIESLGRMLIEGIHTDITINASDGSIGAHRAVLAARSPVFRSMFSHNLQEKELSTINISDMSIEACQAFLNYLYGIIKNEEFLTHRLALLHAADKYDISDLREACHESLLEDIDTKNVLERLQNASLYQLMKLKMSCIRYLVKFGKIFEIKDDFNTFLQNADRDLIAEVFHEVLDAWKGF. 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02958 328 Gene3D Potassium Channel Kv1.1; Chain A 140 291 IPR011333 -
Seca5g02958 328 PANTHER OS08G0495500 PROTEIN-RELATED 5 327 IPR044714 -
Seca5g02958 328 Pfam BTB/POZ domain 159 259 IPR000210 GO:0005515
Seca5g02958 328 CDD BTB_POZ_ZBTB_KLHL-like 162 244 - -
Seca5g02958 328 ProSiteProfiles BTB domain profile. 163 222 IPR000210 GO:0005515
Seca5g02958 328 SUPERFAMILY POZ domain 149 259 IPR011333 -
Seca5g02958 328 SMART BTB_4 163 261 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02958 Seca-Chr5 84014346 84018153 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Seca5g02958 BTB 7.6e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02958 K10523 - gmx:100790186 630.943