Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02956 ATGAAGATCACTGTCATGACTGCTGATGAACAAATTCTCACGTTGGATGTGGATCCCCACGAATCTGTGGAAAACGTCAAGGCATTGCTCGAGGTTGAGACAAGTGTGCCTCTTCAGCAACAGCAACTCCTGTTTAATGGGAAGGAGATGAGGAATTCTGAGAAGTTGAGTGCCCTTGGTGTTAAGGATGATGATTTGCTAATGATGGTCTCTGGTGCTGCTGCTTCTAGGATAAATTTAAATTATTTCAGTGGATCTACCAATGATTTGAGCTTAAATGCTGATGGTTCTGCTGTAAACCCTGGTGCTTTCCAGCAGCACATTAGACGTGATTCTAATTTGATGGGTCAGCTCTTTCAGAATGACCCGGAGTTGGCACAAGGTATTCTAGGGAATGATCTCAATAGATTGCAAGAACTTTTACGAATGCGCCATCGCCAGAGAGAAGAATTACAGCGTCAGAAAGAAGAAGAGCTTGCTCTTCTTTATGCTGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCCATCCGCCAGAAAGGAATTGATGAAAATTGGGCAGCTGCACTAGAACATAATCCTGAAGCTTTTGCTAGAGTGGTCATGTTGTATGTTGACATGGAGGTTAATGGTGTCCCACTGAAGGCATTTGTTGATAGTGGAGCCCAGTCTACAATAATATCAAAAAGCTGTGCTGAGCGTTGTGGATTGTTGAGACTTTTAGATCAGCGTTACAAAGGAATTGCTCATGGAGTTGGCCAATCAGAAATATTGGGTCGAATACATGTAGCTCCTATCAAGATTGGGAGTATATTTTACCCTTGCTCATTCTTAGTGCTGGATTCTCCCAATATGGAGTTTCTCTTTGGATTGGATATGCTCCGAAAGCACCAGTGTATAATTGATTTGAAAGAAAGTGTTTTGCGAGTTGGTGGAGGAGAAGTTTCAGTGCCATTTTTGCAAGAGAAAGACATACCATCTCGGTTCTTAGATGAGGAAAAATATTCCAAGGAAGCTTCAAGCTCAGGTGGCCCAGTAAGTATACTTTTCATTATGTGTCATGAAGCCACTACCGTGTTGAAACTGTAA 1095 0.4201 MKITVMTADEQILTLDVDPHESVENVKALLEVETSVPLQQQQLLFNGKEMRNSEKLSALGVKDDDLLMMVSGAAASRINLNYFSGSTNDLSLNADGSAVNPGAFQQHIRRDSNLMGQLFQNDPELAQGILGNDLNRLQELLRMRHRQREELQRQKEEELALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYKGIAHGVGQSEILGRIHVAPIKIGSIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKESVLRVGGGEVSVPFLQEKDIPSRFLDEEKYSKEASSSGGPVSILFIMCHEATTVLKL. 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02956 364 Coils Coil 134 157 - -
Seca5g02956 364 FunFam DNA damage inducible 1 homolog 2 182 329 - -
Seca5g02956 364 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 341 - -
Seca5g02956 364 Pfam Aspartyl protease 182 304 IPR019103 GO:0004190|GO:0006508
Seca5g02956 364 Gene3D Acid Proteases 183 329 IPR021109 -
Seca5g02956 364 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Seca5g02956 364 SUPERFAMILY Ubiquitin-like 1 75 IPR029071 -
Seca5g02956 364 SMART ubq_7 1 72 IPR000626 GO:0005515
Seca5g02956 364 CDD RP_DDI 189 312 IPR019103 GO:0004190|GO:0006508
Seca5g02956 364 Gene3D - 1 79 - -
Seca5g02956 364 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Seca5g02956 364 SUPERFAMILY Acid proteases 190 305 IPR021109 -
Seca5g02956 364 PRINTS Ubiquitin signature 32 52 IPR019956 -
Seca5g02956 364 PRINTS Ubiquitin signature 11 31 IPR019956 -
Seca5g02956 364 ProSiteProfiles Ubiquitin domain profile. 1 70 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02956 Seca-Chr5 83994781 84002276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02956 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 30.000 6.93e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02956 K11885 - gmx:100779464 596.275