Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02952 ATGGTTTCTAATGTTACTCTTTTATTGGTCTTATATAGGCAACTGGCATTTTTCACTGGAGATACTGTTGGGGGTCTTTTAAATGCTACATTTGGAAATGCAACAGAATTGATCATCTCAATATATGCACTGAAAAGTGGAATGATTCGGGTTGTCCAGCTCTCTCTGCTGGGCTCAATTTTGTCAAATATGTTGTTGGTGCTTGGATGTGCATTCTTAAGTGGTGGGATTGTGTTTCATAAGAAGGAACAGGTGTTTAACAAGGCATCTGCTTCTGTGAATGCAGGATTGTTGTTGATGGCAGTCATGGGCATTCTTTTTCCTGCTGTTCTATATTACACACGCACGGAGGTTCATTTTGGGAAATCAGAGTTGGCACTGTCAAGATTCAGCAGCTGCATCATGCTTGTGGCCTATGCGGCTTACCTATTTTTTCAGTTAAAAAGTGAAAGAAGTCTCTATGTATCCGTGAATGAGGAAGAGGGTCAAAATGGAAACAACTCAAATGAAGATGAATCTCCAGATATTTCTAAATGGGAATCAATAATCTGGCTTTTAGTTATGACTGCTTGGATATCAATCCTGTCAGAATATTTGGTTGGTGCTATACAGGGAGCATCTACTGCATGGAATATTCCAATAGCATTCATCAGTGTCATATTGCTTCCACTAGTGGGGAATGCAGCTGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTGACATTTCCTTAGGAGTAGCAATAGGGTCATCCACACAGATATCTATGTTTGTGATACCATTTTGTGTGGTTATTGGCTGGATAATGGGGCAACCTATGGACCTAAACTTTCAACTTTTTGAGACTGCAGTACTATTTCTAACTGTTATAGTTGTAGCCTTCATGTTACAGGAAGGAACTGCAAATTACTTCAAGGGACTAATGCTTGTTCTTTGCTATCTGATAGTGGCAGCTAGTTTTTATGTACATGTAGATTCAATTCAGTAG 996 0.3916 MVSNVTLLLVLYRQLAFFTGDTVGGLLNATFGNATELIISIYALKSGMIRVVQLSLLGSILSNMLLVLGCAFLSGGIVFHKKEQVFNKASASVNAGLLLMAVMGILFPAVLYYTRTEVHFGKSELALSRFSSCIMLVAYAAYLFFQLKSERSLYVSVNEEEGQNGNNSNEDESPDISKWESIIWLLVMTAWISILSEYLVGAIQGASTAWNIPIAFISVILLPLVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFVIPFCVVIGWIMGQPMDLNFQLFETAVLFLTVIVVAFMLQEGTANYFKGLMLVLCYLIVAASFYVHVDSIQ. 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02952 331 Gene3D - 168 325 IPR044880 -
Seca5g02952 331 Gene3D - 19 160 IPR044880 -
Seca5g02952 331 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 11 328 IPR004713 GO:0006812|GO:0008324|GO:0016020
Seca5g02952 331 Pfam Sodium/calcium exchanger protein 19 147 IPR004837 GO:0016020|GO:0055085
Seca5g02952 331 Pfam Sodium/calcium exchanger protein 181 322 IPR004837 GO:0016020|GO:0055085
Seca5g02952 331 FunFam Vacuolar cation/proton exchanger 21 160 - -
Seca5g02952 331 NCBIfam calcium/proton exchanger 14 324 IPR004798 GO:0006816|GO:0015369
Seca5g02952 331 FunFam Vacuolar cation/proton exchanger 169 325 - -
Seca5g02952 331 NCBIfam calcium/proton exchanger 13 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02952 Seca-Chr5 83916799 83921531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02952 13 331 Antiporters AT3G13320 77.743 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02952 K07300 - gmx:100799276 566.229