Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02941 ATGGCTATGGTTTCAGCTGGTTTCCACAAAGTGGCTGACATTTGTGGTAGGAGGGAAAGCTGGAGGCTCCGGCTAAAACTTATCAGGGTCTGGAAGATGTCTGCAGTGGCCACTCCGGACGATCTGTTTGCCATGCACATGCTGTTTGTTGACCAAGAGGGTACCTGCATAGAATCTGTCATTCAGAAGCACTTAATGCACCGGTTTGCCAACTCTGTGATAGAAGGCGAGGTGTATAATGTAACTCAGTTCACCGTGGCTCGAAATAGTGGTAAATTCATAGCAACTCACCATGACCACAAGCTGACCTTTAATGCCAACACAAGGATTGTGGCATGCCCGACGGTTGCTATTCCGGCTACCGGTTTGAACCTCGTCAAAACCTCTGATATTTTGAAGACCAAAGGGTCTTCTCAACATCTTATGGACTTCATGGGTATTGTTACTGGCATATCAGAAGAGCTGACCCTAAGCAAGGAAGGGCGGAAGACACGCCTGATGCTCATCGATATGGTCGACGAAATGGGAAAGATAAGATGTGCTATTTTCGGACAACCCATTGACACTGTCAAAGGCTTCCTTACTCTTTCCCGCTGCGGCCTGCCTGTTCTAATCATCCATCTTGCTCGTGTGAATCTTGACAAGGGGGAGGTGGGCATTCAAAACCTTTTGAATGCCTCGAAGCTGTTCTGGAACCCTGAAATACCTGAGGCAATAGAGTTCAAGAATAGCCTCGCTGTCCACGAGATTGAAACCGATGTGGAGATATCCCTCATTTCAGACAATAGGCGCCCTGTCTCTGTTCGCGAGCAATTCCTGACAAAGTTTCCCAGGAAACGTGTGGGGGACCTGAACCACATGCTAGAGGATGGGACTTATATAGTTCTTGGTACAATAACTGAGGTGTTCCAAGAAGATGACTGGTGGTACATAGCATGCTCTTGCATGAGGGCTGTTGACTTCAGCCAGGGTTTTCCCTATTGCAACGATTGCAAACGTGAGGTGTTCGAAATGCCAACTAGGTACAAGGTAAAGATCCTTGTGGTTGATCAGTCAGATTCCACTGAACTAATCATGTTTGACTCGCCATGTTATTCTCTGCTCAACATACCTTGCAAGGGGCTACTTTCGGACCATAAGGCTAGGAAGACAGATGGTTATCCACCTGAAATCTTAGATTTCATTGGCCAAGAAATGCTTTTCAGTGTTGAACTGAATGCAGAGAAATTTTCCTCATTTGATGGAGAGGCCATCAAAGTGCAGAAGATATGTTTAGATGCAAGCATTCTGGATGAGTATAAGGAACTCATTGATGATGAGACTCTTTTAAAGCTGAAATTTGCTCCAGCCTTCTCCAAATTTGAGGATGGCGACGGAAAGAGCTGTGTTATTGATCTGACCCCAAACAACATCACAGTTGGTGGTCAGTGTGACTTGACTCCCATGTGTTCTACGCAGTCTCCCCCCGCTCCGTGTGATAGCATTGTGGATTGCAAACTTCCTGTTAAGGTCAAAGATAATGAGCCCTGTGAAAAAAAAAAGAAGGGGAAAGCCTAA 1557 0.4599 MAMVSAGFHKVADICGRRESWRLRLKLIRVWKMSAVATPDDLFAMHMLFVDQEGTCIESVIQKHLMHRFANSVIEGEVYNVTQFTVARNSGKFIATHHDHKLTFNANTRIVACPTVAIPATGLNLVKTSDILKTKGSSQHLMDFMGIVTGISEELTLSKEGRKTRLMLIDMVDEMGKIRCAIFGQPIDTVKGFLTLSRCGLPVLIIHLARVNLDKGEVGIQNLLNASKLFWNPEIPEAIEFKNSLAVHEIETDVEISLISDNRRPVSVREQFLTKFPRKRVGDLNHMLEDGTYIVLGTITEVFQEDDWWYIACSCMRAVDFSQGFPYCNDCKREVFEMPTRYKVKILVVDQSDSTELIMFDSPCYSLLNIPCKGLLSDHKARKTDGYPPEILDFIGQEMLFSVELNAEKFSSFDGEAIKVQKICLDASILDEYKELIDDETLLKLKFAPAFSKFEDGDGKSCVIDLTPNNITVGGQCDLTPMCSTQSPPAPCDSIVDCKLPVKVKDNEPCEKKKKGKA. 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02941 518 Gene3D - 275 439 IPR012340 -
Seca5g02941 518 Pfam Replication factor-A C terminal domain 296 416 IPR013955 -
Seca5g02941 518 SUPERFAMILY Nucleic acid-binding proteins 123 248 IPR012340 -
Seca5g02941 518 Gene3D - 117 254 IPR012340 -
Seca5g02941 518 SUPERFAMILY Nucleic acid-binding proteins 7 116 IPR012340 -
Seca5g02941 518 SUPERFAMILY Nucleic acid-binding proteins 289 422 IPR012340 -
Seca5g02941 518 Gene3D - 7 113 IPR012340 -
Seca5g02941 518 CDD RPA1_DBD_A_like 22 110 - -
Seca5g02941 518 Pfam Domain of unknown function DUF223 47 134 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02941 Seca-Chr5 83756150 83759291 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02941 49 424 Core DNA Replication Machinery Family AT5G08020 20.506 5.60e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02941 - - lja:Lj6g3v0884310.1 318.931