Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02934 ATGGATGGGACTCCTAGTATTCTCCAAATTCTTTTGATGCAGGCATGCGCTACAAATCCTTATCAGGATCCATATTATGGGGGCATGATGGCAGCTTACGGTCACCAGCAGTTGGGATATGCTCCTTTTATAGGAATTCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAACCTGTTTATGTCAATGCCAAACAATACCAAGGAATTCTGAGGCGAAGACAGGCTCGTGCTAAAGCAGAGCTTGAAAAGAAGCTAATAAAGTCTAGAAAGCCATATCTTCATGAATCTCGGCATCAGCATGCTATGAGAAGGGCAAGGGGCACCGGGGGACGTTTTGCAAAGAAAAATGAAGGTGAGGCCTCAAACAACTCGGGCAAAGAAAAGGATAATGGTTCAGGTCCTGTTCTGTCATCACAATCAATTAGTTCATCTGGTTCTGAACCTTTACCTTCTGACTCTGCTGAAACCTGGAATTCTCCCAACATGCAACAAGATGCAAGAGGATCAAAAGTGGGCAACAAATTTGAGGCACCCAATTATGCAAATGGCAGTGGCTCCTACCATAATAATAATAATGGTTTGCAATCTTCAAGGTATCATCAGCACTCAGGTGAAAGAGTGGAGGAAGGGGACTGTTCAGGCCAGCAAAGGGGAAGCATCTCTTCAAATGAGGCATCACAGAGGCGCCTTGCTATTCAGTAG 711 0.4515 MDGTPSILQILLMQACATNPYQDPYYGGMMAAYGHQQLGYAPFIGIPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKNEGEASNNSGKEKDNGSGPVLSSQSISSSGSEPLPSDSAETWNSPNMQQDARGSKVGNKFEAPNYANGSGSYHNNNNGLQSSRYHQHSGERVEEGDCSGQQRGSISSNEASQRRLAIQ. 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02934 236 SMART cbf3 57 118 IPR001289 GO:0003700|GO:0006355
Seca5g02934 236 MobiDBLite consensus disorder prediction 182 203 - -
Seca5g02934 236 PRINTS CCAAT-binding transcription factor subunit B signature 61 83 IPR001289 GO:0003700|GO:0006355
Seca5g02934 236 PRINTS CCAAT-binding transcription factor subunit B signature 92 115 IPR001289 GO:0003700|GO:0006355
Seca5g02934 236 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 13 172 IPR001289 GO:0003700|GO:0006355
Seca5g02934 236 MobiDBLite consensus disorder prediction 93 112 - -
Seca5g02934 236 MobiDBLite consensus disorder prediction 128 171 - -
Seca5g02934 236 Gene3D - 58 120 - -
Seca5g02934 236 ProSiteProfiles NF-YA/HAP2 family profile. 58 118 IPR001289 GO:0003700|GO:0006355
Seca5g02934 236 ProSitePatterns NF-YA/HAP2 subunit signature. 63 83 IPR018362 GO:0003677|GO:0016602
Seca5g02934 236 MobiDBLite consensus disorder prediction 217 236 - -
Seca5g02934 236 MobiDBLite consensus disorder prediction 91 236 - -
Seca5g02934 236 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 60 115 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02934 Seca-Chr5 83678084 83683371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02934 16 236 CCAAT-HAP2 Transcription Factor Family AT3G20910 57.466 1.98e-74 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Seca5g02934 CBFB_NFYA 3.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02934 K08064 - gmx:100808378 350.903