Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02918 ATGGCACCAAATAAGCAAAAAAAGATGGCAGCTGCCTATGCTAAAATGAAGGAATTTGGCATCTCCAAAGCTAAATTAAAGGAAACAGTAGAGGACCTTCTGAAGGTTTATTGTAATAACTGGGAGTTTATTGAGGATGAGAACTATAGAGTTCTAATGGATGCTATTTTAGAGAGGAAAGATGAAGTTAAGGAAGTAGAATCTCAAAAAGAAGCTGAGATTCATGATGATCCTTTAATAAGCGAACCTCTAAAGAAGAGATTGAGGCCAAGGAACCAGAAGGGACAGATTGCAAGTCCGGTAAAAAAATTGAAAACACACTTGGTAAAAACTTCAACAATGCTAGAGAAGGGTGAGGGTGAACTATCTTCTGGCTCTCAAACATCTTCCGAAAAAGACAGTGAACATTTAGTTAAAAGAAAATCTGCAAGAGACAAGAAGCAGATTGTGGTTTATGAGAATAGTATATATCATGGAGATGATGATTTTTGTTCCTGGCCCGCAGAAAATTCATTGATGGGACAAGAAAATGGACTTTTATTTGAAGACTGTGAGCCTCTGAAAAAAAGATCTCGAGCCTACAATAACAAGAAAGATGATAGGGACTTTATATATTATCAAAGGCATAGAAAGAAACCACTCATTTCAGAATTTTCTTTTGGAAAGCAACCATCTGAGTCCTGCACTGACACAGAGAATATTCTAGATTTTTACCATAATGATTGTTTAGGCATTCCCTTTGGTGATGCATATGAAGAGGTGCCTCTCAAATCAATAAATCCAGCTGCTCCCACTGGTACCAGCTCTGATGTCATGGAAGAGGAGACAAAGTTTCTGCAATTTGAACATTTAAATGTGGACACTAAAGGCAGCTGTGATTCAAGTAGATTGCAATTTGATATTGCTTCTTCATCCAAGGGAGATGTGAGAGTTGCTCTAATCTGTAACCCCTCTCAATCTGATTTTCATATCCCAAGTTTGGATGCAGTTCTTAAAGCTGTGGAAGAGAAATATAAATTGCACAAAAGTTTGGATTCAGATTTCTCTATGATGAAGCTGTTGAAAGATGTCTGTGAGTTTTTCTTGGCAATGGCTACCTCATCCTCTGATGATAGGGGTTTGTGGATTAATAATATGTCCCTGTCAAAGGGATGTGATAGTTCAAAAGATTATGGAGACAATTTTTCCGTTCATCTAGGCTATTCAAATTATTTTGCCAATTTTCACAATCTTGTCAAGATAGTACCTCAGATTCCAAAGTCTGTAACTTTAAGTGGACTAGAAGGTCTTCATTGCATTTGTGGCTTCGGGATACCAGATATTTTAGACACTCCAAGTCAAAGGGAAAGAAGGATAAAAGTTCTGGATCACATAGAGTTCACAAATTCAAATGTTGTGGCTGGCATTGAAAAGGACTGCTCTTCCGCTGTGGAGTGTTGTTATATTGATGACATAACTAGAGGAGAAGAAAAGGTGAAAATTTCCTTGGAAAATAGCTTCTTTGGTGATCAACCGCCAATCTTCTTCTACACTCAACATAATTTAATATATGATAAGGCAAATGTCAAGTTTTCACTTGCATGCATATCCAGTGAAGAGTGCTGTTCACATTGTTCTGGAGATTGCCTTGCAGTGCCATTACCTTGTGCATGTGCTCGTATATCTGGTGGCGAGTATGCTTACACACAAGAAGGATTGCTTAAGGAAAAGTTTCTTGAGGAGTGTATATCCCTTGTTAGGGATCCAAAGGAACACAATTTCTTTTATTGCAAGAGATGCCCACTAGAGATGTCTAAGAACAAACAGGAAGTCAAGCACTGCAAGGGACATCTGCTGCGAAAATTCATAAAAGAATGCTGGTCAAAATGTGGATGTAATAAAAACTGTGGCAACCGTATTGTTCAGCAAGGCATCACTACAGATCTTCAGGTGTTTTGGACACCAGAGGGGAAGGGTTGGGGAATCCGAACACTTAAAGATTTGCCAAAGGGTGCCTTTGTTTGTGAGTTTGCTGGGGAATTAGTAACCAACTTAGAACTATGTAAGCGAATTGTGCAAAGCATTGGTGAAGAGAAGCACACATATACAGTACTGCTTGATGCAGATTGGTGTTCAGAGAATAACCTGAAGGATGAAGAGACTCTCTGTTTAGATGCAACATTATATGGAAATGTGTCTCGATTTATCAATCACAGGTGTACTGATGCAAGCTTAATTGAGATCCCAGTTGAAGTGGAAACACCAGATCATCACTATTATCACGACTATGGCATTGACTTCAATTACCAAGATCATCCTGTGAATGCTTTCAGATGCCTTTGTAACAGTCCATTGTGCCGTGACCAAAGACAGAAAAATGATTGCACAAAGATACAGTTGTTCTCTGCAAACTTATTAGAACTGAATACCAAGTGA 2415 0.3851 MAPNKQKKMAAAYAKMKEFGISKAKLKETVEDLLKVYCNNWEFIEDENYRVLMDAILERKDEVKEVESQKEAEIHDDPLISEPLKKRLRPRNQKGQIASPVKKLKTHLVKTSTMLEKGEGELSSGSQTSSEKDSEHLVKRKSARDKKQIVVYENSIYHGDDDFCSWPAENSLMGQENGLLFEDCEPLKKRSRAYNNKKDDRDFIYYQRHRKKPLISEFSFGKQPSESCTDTENILDFYHNDCLGIPFGDAYEEVPLKSINPAAPTGTSSDVMEEETKFLQFEHLNVDTKGSCDSSRLQFDIASSSKGDVRVALICNPSQSDFHIPSLDAVLKAVEEKYKLHKSLDSDFSMMKLLKDVCEFFLAMATSSSDDRGLWINNMSLSKGCDSSKDYGDNFSVHLGYSNYFANFHNLVKIVPQIPKSVTLSGLEGLHCICGFGIPDILDTPSQRERRIKVLDHIEFTNSNVVAGIEKDCSSAVECCYIDDITRGEEKVKISLENSFFGDQPPIFFYTQHNLIYDKANVKFSLACISSEECCSHCSGDCLAVPLPCACARISGGEYAYTQEGLLKEKFLEECISLVRDPKEHNFFYCKRCPLEMSKNKQEVKHCKGHLLRKFIKECWSKCGCNKNCGNRIVQQGITTDLQVFWTPEGKGWGIRTLKDLPKGAFVCEFAGELVTNLELCKRIVQSIGEEKHTYTVLLDADWCSENNLKDEETLCLDATLYGNVSRFINHRCTDASLIEIPVEVETPDHHYYHDYGIDFNYQDHPVNAFRCLCNSPLCRDQRQKNDCTKIQLFSANLLELNTK. 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02918 804 Gene3D SET domain 466 756 IPR046341 -
Seca5g02918 804 Gene3D - 1 62 IPR043017 -
Seca5g02918 804 ProSiteProfiles Pre-SET domain profile. 538 637 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca5g02918 804 ProSiteProfiles SET domain profile. 640 804 IPR001214 GO:0005515
Seca5g02918 804 SMART set_7 640 763 IPR001214 GO:0005515
Seca5g02918 804 MobiDBLite consensus disorder prediction 117 131 - -
Seca5g02918 804 Pfam Pre-SET motif 485 632 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca5g02918 804 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 788 - -
Seca5g02918 804 SMART preset_2 482 624 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca5g02918 804 SUPERFAMILY SET domain 492 780 IPR046341 -
Seca5g02918 804 Pfam Ubiquitin-binding WIYLD domain 5 62 IPR018848 -
Seca5g02918 804 Pfam SET domain 652 735 IPR001214 GO:0005515
Seca5g02918 804 MobiDBLite consensus disorder prediction 115 141 - -
Seca5g02918 804 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 803 IPR025776 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02918 Seca-Chr5 83472057 83477285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02918 616 754 C2H2 Transcription Factor Family AT2G23740 40.000 1.37e-20 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca5g02918 Pre-SET 3.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02918 - - qsu:111999549 605.134