Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca5g02902 | CAGAAACTTCTCCTCATAGAAATCACAGCCACAAACTTCCCCGTCTATATAAACCTCTTTGGCTTAGGAGCATTTCTTTTCTTCCCAAACGCAATTATCTGCGTGTCGTTCCCTGAGAGCGCTGGTGCCGAACCTCAATCTTCGAATAGAGCAAGTCTTCGTCGTTTATCTACTGCTATGATGTCGTATTCAAGAAGATCAAGGTATTCTCCTTCTCCTTCTCCATACAGGCGATACAGTAGGTCTGTGTCCAGGTCTCTTTCTAGGTCGAGATCGAGAAGCCGTTCAAGGAGCACATCACTAGATGCTGAAAATCCAGGAAACAACCTGTATGTGACAGGATTGTCTCCTAGGATCACGAAGAGAGAACTGGAGAAACATTTTGCTGCTGAGGGAAAAGTTATAGATGTTCATCTGGTAGTTGATCCTTGGACAAGGGAATCCCGTGGGTTTGGGTTTGTGACAATGGAAACTGTTGAAGAAGCTGATCGATGCGTGAAGTATCTAAATCGCTCTGTACTTGAAGGGCGTGTGATCACGGTGGAGAAGTTTCTGTGGCAGCAGGTTAGCTGTGTGAAGCAGCTCTTCGTCAAACTCTCAAATCCCAACTAA | 612 | 0.4542 | QKLLLIEITATNFPVYINLFGLGAFLFFPNAIICVSFPESAGAEPQSSNRASLRRLSTAMMSYSRRSRYSPSPSPYRRYSRSVSRSLSRSRSRSRSRSTSLDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMETVEEADRCVKYLNRSVLEGRVITVEKFLWQQVSCVKQLFVKLSNPN. | 204 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca5g02902 | 203 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 110 | 179 | IPR000504 | GO:0003723 | |
Seca5g02902 | 203 | Gene3D | - | 43 | 185 | IPR012677 | - | |
Seca5g02902 | 203 | PANTHER | TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED | 98 | 183 | - | - | |
Seca5g02902 | 203 | MobiDBLite | consensus disorder prediction | 64 | 109 | - | - | |
Seca5g02902 | 203 | SMART | rrm1_1 | 109 | 182 | IPR000504 | GO:0003723 | |
Seca5g02902 | 203 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 108 | 182 | IPR000504 | GO:0003723 | |
Seca5g02902 | 203 | FunFam | Serine/arginine-rich splicing factor SR45a | 62 | 189 | - | - | |
Seca5g02902 | 203 | SUPERFAMILY | RNA-binding domain, RBD | 63 | 183 | IPR035979 | GO:0003676 | |
Seca5g02902 | 203 | MobiDBLite | consensus disorder prediction | 64 | 89 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca5g02902 | Seca-Chr5 | 83124821 | 83126726 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca5g02902 | 109 | 181 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 35.616 | 9.34e-08 | 49.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca5g02902 | - | - | aip:107613061 | 204.912 |