Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02902 CAGAAACTTCTCCTCATAGAAATCACAGCCACAAACTTCCCCGTCTATATAAACCTCTTTGGCTTAGGAGCATTTCTTTTCTTCCCAAACGCAATTATCTGCGTGTCGTTCCCTGAGAGCGCTGGTGCCGAACCTCAATCTTCGAATAGAGCAAGTCTTCGTCGTTTATCTACTGCTATGATGTCGTATTCAAGAAGATCAAGGTATTCTCCTTCTCCTTCTCCATACAGGCGATACAGTAGGTCTGTGTCCAGGTCTCTTTCTAGGTCGAGATCGAGAAGCCGTTCAAGGAGCACATCACTAGATGCTGAAAATCCAGGAAACAACCTGTATGTGACAGGATTGTCTCCTAGGATCACGAAGAGAGAACTGGAGAAACATTTTGCTGCTGAGGGAAAAGTTATAGATGTTCATCTGGTAGTTGATCCTTGGACAAGGGAATCCCGTGGGTTTGGGTTTGTGACAATGGAAACTGTTGAAGAAGCTGATCGATGCGTGAAGTATCTAAATCGCTCTGTACTTGAAGGGCGTGTGATCACGGTGGAGAAGTTTCTGTGGCAGCAGGTTAGCTGTGTGAAGCAGCTCTTCGTCAAACTCTCAAATCCCAACTAA 612 0.4542 QKLLLIEITATNFPVYINLFGLGAFLFFPNAIICVSFPESAGAEPQSSNRASLRRLSTAMMSYSRRSRYSPSPSPYRRYSRSVSRSLSRSRSRSRSRSTSLDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMETVEEADRCVKYLNRSVLEGRVITVEKFLWQQVSCVKQLFVKLSNPN. 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02902 203 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 179 IPR000504 GO:0003723
Seca5g02902 203 Gene3D - 43 185 IPR012677 -
Seca5g02902 203 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 98 183 - -
Seca5g02902 203 MobiDBLite consensus disorder prediction 64 109 - -
Seca5g02902 203 SMART rrm1_1 109 182 IPR000504 GO:0003723
Seca5g02902 203 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 182 IPR000504 GO:0003723
Seca5g02902 203 FunFam Serine/arginine-rich splicing factor SR45a 62 189 - -
Seca5g02902 203 SUPERFAMILY RNA-binding domain, RBD 63 183 IPR035979 GO:0003676
Seca5g02902 203 MobiDBLite consensus disorder prediction 64 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02902 Seca-Chr5 83124821 83126726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02902 109 181 Eukaryotic Initiation Factors Gene Family AT2G36660 35.616 9.34e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02902 - - aip:107613061 204.912