Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02897 ATGAAGAAAACACCAGACCCCAGTTTGCATCAGTCTAACCAAAGAAAAAAGAACTCTAGTCTCCAAGATAGTGGTGCTGGTGCAGGTAAAGGAAATGGCACACAGAAGCAAAATCATGAGAATCAAAGTTCCATGACATATTTCAAGAAGATATTTGCAAGCCTTTTTACATTGTTCCTCCCTGGGAAAGGAAAAACAGTCTCAGAAGCTGCTCAAGTTGATGACAGAAAAAATGCACACAAAGTCAGAGGTGTATCATCTTCAACAGATATATCATCTGATAGTTCTAAGAGTTCATCAAAAGGGAAATTTTCTCAATCCTCCACACCATCTAGCACATCAAACACTAAGCTTGGAACGGGAAACTTTTCCTTTGAGGAAATTTACAAGGCAACGGCAAGATTCTCTCTAGATAATAAGATTGGGGAAGGTGGGTTTGGAACAGTATATAAGGGAAAACTAAATGATGGAACCCTTGTTGCTGTAAAACGTGCCAAGAAGGATCAAGATGCACAAAACAAGCAGTTAGCCGAGTTCAAGAATGAAATAAACACCTTGTCAAAAATTGAGCATCGGAATCTTGTGAGGTGGTATGGATATTTGGAGCATGGTGATGAAAAGATTATTGTTGTTGAATATGTTAATAATGGAACTCTTCGGGAACATCTAGATGGTATGCGGGGAAATGGACTAGAACTTGGTGAGCGTCTAGACATAGCAATTGATGTAGCTCATGCTGTTACATACCTTCATATGTACACAGATCATCCAATTATTCATAGAGACATCAAAGCATCAAATATCTTAATCACTGACAATCTAAAGGCCAAAGTGGCAGACTTTGGTTTTGCCCGGTTGGCTGCAGAAGACCCATCTGCAACTCATGTTTCAACAAATATTAAAGGAACAGCTGGTTACTTAGATCCTGATTACATGAGAACACACCATCTCTCTGAAAAGAGTGATGTTTATTCCTTTGGTGTGTTGCTTGTTGAAATGATGACAGGAAGACATCCAGTTGAACCAAAGAGACCCCTCAGTGAGAGAGTTACAATTAAGTGGGCAATGCAGATGTTGAAACAAGGAGAAATTGTGATTGCCATGGATCCAAGGCTTCGGAGAAGTCCAGCCTCAAACAAAGCAGTACAGAAGGTTCTCAAGCTTGCTTTCCAATGCCTTGCACCTGTGAGAAGATCACGGCCAACCATGAAGAGCTGTGCAGAGGTTCTATGGAGCATCCGAAAAGATTTTAGAGATAAAGTCCTTTCTCATCCTCCACTTGGTTCTCCCCATTCTGCAGATTTTCCTCAAAGGGATACTAATTCTAGAAAGAATAGGCATAAGTCATATGGTATTGAAAATGACAGCCGCTACAAATTTGTCTCTGCATAA 1392 0.4023 MKKTPDPSLHQSNQRKKNSSLQDSGAGAGKGNGTQKQNHENQSSMTYFKKIFASLFTLFLPGKGKTVSEAAQVDDRKNAHKVRGVSSSTDISSDSSKSSSKGKFSQSSTPSSTSNTKLGTGNFSFEEIYKATARFSLDNKIGEGGFGTVYKGKLNDGTLVAVKRAKKDQDAQNKQLAEFKNEINTLSKIEHRNLVRWYGYLEHGDEKIIVVEYVNNGTLREHLDGMRGNGLELGERLDIAIDVAHAVTYLHMYTDHPIIHRDIKASNILITDNLKAKVADFGFARLAAEDPSATHVSTNIKGTAGYLDPDYMRTHHLSEKSDVYSFGVLLVEMMTGRHPVEPKRPLSERVTIKWAMQMLKQGEIVIAMDPRLRRSPASNKAVQKVLKLAFQCLAPVRRSRPTMKSCAEVLWSIRKDFRDKVLSHPPLGSPHSADFPQRDTNSRKNRHKSYGIENDSRYKFVSA. 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02897 463 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 1 98 213 - -
Seca5g02897 463 MobiDBLite consensus disorder prediction 422 455 - -
Seca5g02897 463 ProSiteProfiles Protein kinase domain profile. 135 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02897 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Seca5g02897 463 MobiDBLite consensus disorder prediction 69 83 - -
Seca5g02897 463 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 214 424 - -
Seca5g02897 463 MobiDBLite consensus disorder prediction 437 454 - -
Seca5g02897 463 Gene3D Phosphorylase Kinase; domain 1 93 213 - -
Seca5g02897 463 Coils Coil 162 182 - -
Seca5g02897 463 MobiDBLite consensus disorder prediction 84 117 - -
Seca5g02897 463 SMART serkin_6 135 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02897 463 ProSitePatterns Protein kinases ATP-binding region signature. 141 167 IPR017441 GO:0005524
Seca5g02897 463 MobiDBLite consensus disorder prediction 1 42 - -
Seca5g02897 463 Gene3D Transferase(Phosphotransferase) domain 1 214 424 - -
Seca5g02897 463 SUPERFAMILY Protein kinase-like (PK-like) 109 413 IPR011009 -
Seca5g02897 463 Pfam Protein kinase domain 136 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02897 463 MobiDBLite consensus disorder prediction 11 42 - -
Seca5g02897 463 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 426 - -
Seca5g02897 463 MobiDBLite consensus disorder prediction 67 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02897 Seca-Chr5 83044637 83049449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02897 84 456 Trihelix Transcription Factor Family AT1G70460 37.731 2.21e-70 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Seca5g02897 Pkinase 1.1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02897 - - gmx:100819818 690.263