Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02894 ATGACCTATTGGAGACTTGTTAATGTCTTTCCCTTCAGTGCGATCAAACGGATTCTCAAAGTTCTGTCAAGCTTTCTTTTAAGTGGAATGAAAAAACGAGAACAAGCCTCCACTGCCATGGTTACCAAACGGTCCAAACCAAACACGACAGAGAGAAAGAGCATCATCAGAAAGACTGAAATCCATGTTCCTCGACGAGTTCTTCGTACAACAATTGCACGTGTGATACCATCACCAAATACGAGGGAGAGAAAATCTACCACTGATGAAAAGAAAAATCAAGCATCCAGTGAGAGTTCTCCATCACTCTCTGATACTCACAAGCACATGCAAAAAAAGATAGACAGCTTAAGCTCGGTTGGTCAATCCTCAAAATGCTTTTGCGGCAGCATATGCTTTGATTTCAAAACAGAGGCTGAACACTTTTGCGGCATATGCTTTGATTCCAAAACAGAAGCTGATATGTTCAGAAGAAGTAAGTGTAACCACCCCTTTTGTGTTGATTGCATATCCAAGCATGTAGCTACTCAAATACAACAAAATATTGTCAAGGTGAATTGTCCACATCCAAATTGTTCTATACAATTGAAGCCGAAATATTTGCAAGCCATTTTGCCTAAACAAGTTATTGATCGATGGGAATGTGCAAGAGTTGAGTCTTCTATTGATTCCAGCCAAAAGATTTACTGCCCTTTTAAGAATTGCTCTGTTTTGTTGGTGAATGATGGGGCAGAAGTTGTCACCAGTTCTGAGTGCCCCTCCTGTCACAGGCTATTCTGTGCACAGTGTAAGGTCCCATGGCATGCAGGACTGAATTGCAAGGAATTCAGAAGGAGTAAAAGTGAAAAGAAGTTAGAGAGTGAATTTCTCAAGTTGGCCAAAAGTAAAATGTGGCAGAAATGTCCTAAATGCTCTATCTATGTCCAAAGAAGTTGTGGATGTGAACACATGACCTGCAGATGTGGATGTCACTTCTGCTACAACTGTGGGAAGGATTGGAAGTATGGACATACATGCAAGAAACTTTAG 1029 0.4082 MTYWRLVNVFPFSAIKRILKVLSSFLLSGMKKREQASTAMVTKRSKPNTTERKSIIRKTEIHVPRRVLRTTIARVIPSPNTRERKSTTDEKKNQASSESSPSLSDTHKHMQKKIDSLSSVGQSSKCFCGSICFDFKTEAEHFCGICFDSKTEADMFRRSKCNHPFCVDCISKHVATQIQQNIVKVNCPHPNCSIQLKPKYLQAILPKQVIDRWECARVESSIDSSQKIYCPFKNCSVLLVNDGAEVVTSSECPSCHRLFCAQCKVPWHAGLNCKEFRRSKSEKKLESEFLKLAKSKMWQKCPKCSIYVQRSCGCEHMTCRCGCHFCYNCGKDWKYGHTCKKL. 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02894 342 CDD Rcat_RBR_unk 297 333 - -
Seca5g02894 342 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Seca5g02894 342 FunFam RBR-type E3 ubiquitin transferase 138 224 - -
Seca5g02894 342 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 71 333 IPR031127 GO:0004842|GO:0016567
Seca5g02894 342 Pfam IBR domain, a half RING-finger domain 212 273 IPR002867 GO:0008270
Seca5g02894 342 Pfam IBR domain, a half RING-finger domain 292 339 IPR002867 GO:0008270
Seca5g02894 342 SUPERFAMILY RING/U-box 139 222 - -
Seca5g02894 342 MobiDBLite consensus disorder prediction 72 114 - -
Seca5g02894 342 SUPERFAMILY RING/U-box 289 340 - -
Seca5g02894 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 225 IPR013083 -
Seca5g02894 342 Gene3D - 271 341 - -
Seca5g02894 342 ProSiteProfiles Zinc finger RING-type profile. 143 188 IPR001841 -
Seca5g02894 342 CDD BRcat_RBR_unk 224 276 - -
Seca5g02894 342 ProSiteProfiles TRIAD supradomain profile. 139 342 IPR044066 -
Seca5g02894 342 SUPERFAMILY RING/U-box 225 278 - -
Seca5g02894 342 SMART ibrneu5 211 273 IPR002867 GO:0008270
Seca5g02894 342 SMART ibrneu5 279 339 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02894 Seca-Chr5 83015882 83017333 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02894 143 330 C3H Transcription Factor Family AT2G19610 31.188 7.77e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02894 K11975 - lang:109340029 291.967