Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca5g02894 | ATGACCTATTGGAGACTTGTTAATGTCTTTCCCTTCAGTGCGATCAAACGGATTCTCAAAGTTCTGTCAAGCTTTCTTTTAAGTGGAATGAAAAAACGAGAACAAGCCTCCACTGCCATGGTTACCAAACGGTCCAAACCAAACACGACAGAGAGAAAGAGCATCATCAGAAAGACTGAAATCCATGTTCCTCGACGAGTTCTTCGTACAACAATTGCACGTGTGATACCATCACCAAATACGAGGGAGAGAAAATCTACCACTGATGAAAAGAAAAATCAAGCATCCAGTGAGAGTTCTCCATCACTCTCTGATACTCACAAGCACATGCAAAAAAAGATAGACAGCTTAAGCTCGGTTGGTCAATCCTCAAAATGCTTTTGCGGCAGCATATGCTTTGATTTCAAAACAGAGGCTGAACACTTTTGCGGCATATGCTTTGATTCCAAAACAGAAGCTGATATGTTCAGAAGAAGTAAGTGTAACCACCCCTTTTGTGTTGATTGCATATCCAAGCATGTAGCTACTCAAATACAACAAAATATTGTCAAGGTGAATTGTCCACATCCAAATTGTTCTATACAATTGAAGCCGAAATATTTGCAAGCCATTTTGCCTAAACAAGTTATTGATCGATGGGAATGTGCAAGAGTTGAGTCTTCTATTGATTCCAGCCAAAAGATTTACTGCCCTTTTAAGAATTGCTCTGTTTTGTTGGTGAATGATGGGGCAGAAGTTGTCACCAGTTCTGAGTGCCCCTCCTGTCACAGGCTATTCTGTGCACAGTGTAAGGTCCCATGGCATGCAGGACTGAATTGCAAGGAATTCAGAAGGAGTAAAAGTGAAAAGAAGTTAGAGAGTGAATTTCTCAAGTTGGCCAAAAGTAAAATGTGGCAGAAATGTCCTAAATGCTCTATCTATGTCCAAAGAAGTTGTGGATGTGAACACATGACCTGCAGATGTGGATGTCACTTCTGCTACAACTGTGGGAAGGATTGGAAGTATGGACATACATGCAAGAAACTTTAG | 1029 | 0.4082 | MTYWRLVNVFPFSAIKRILKVLSSFLLSGMKKREQASTAMVTKRSKPNTTERKSIIRKTEIHVPRRVLRTTIARVIPSPNTRERKSTTDEKKNQASSESSPSLSDTHKHMQKKIDSLSSVGQSSKCFCGSICFDFKTEAEHFCGICFDSKTEADMFRRSKCNHPFCVDCISKHVATQIQQNIVKVNCPHPNCSIQLKPKYLQAILPKQVIDRWECARVESSIDSSQKIYCPFKNCSVLLVNDGAEVVTSSECPSCHRLFCAQCKVPWHAGLNCKEFRRSKSEKKLESEFLKLAKSKMWQKCPKCSIYVQRSCGCEHMTCRCGCHFCYNCGKDWKYGHTCKKL. | 343 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca5g02894 | 342 | CDD | Rcat_RBR_unk | 297 | 333 | - | - | |
Seca5g02894 | 342 | ProSitePatterns | Zinc finger RING-type signature. | 161 | 170 | IPR017907 | - | |
Seca5g02894 | 342 | FunFam | RBR-type E3 ubiquitin transferase | 138 | 224 | - | - | |
Seca5g02894 | 342 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 71 | 333 | IPR031127 | GO:0004842|GO:0016567 | |
Seca5g02894 | 342 | Pfam | IBR domain, a half RING-finger domain | 212 | 273 | IPR002867 | GO:0008270 | |
Seca5g02894 | 342 | Pfam | IBR domain, a half RING-finger domain | 292 | 339 | IPR002867 | GO:0008270 | |
Seca5g02894 | 342 | SUPERFAMILY | RING/U-box | 139 | 222 | - | - | |
Seca5g02894 | 342 | MobiDBLite | consensus disorder prediction | 72 | 114 | - | - | |
Seca5g02894 | 342 | SUPERFAMILY | RING/U-box | 289 | 340 | - | - | |
Seca5g02894 | 342 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 136 | 225 | IPR013083 | - | |
Seca5g02894 | 342 | Gene3D | - | 271 | 341 | - | - | |
Seca5g02894 | 342 | ProSiteProfiles | Zinc finger RING-type profile. | 143 | 188 | IPR001841 | - | |
Seca5g02894 | 342 | CDD | BRcat_RBR_unk | 224 | 276 | - | - | |
Seca5g02894 | 342 | ProSiteProfiles | TRIAD supradomain profile. | 139 | 342 | IPR044066 | - | |
Seca5g02894 | 342 | SUPERFAMILY | RING/U-box | 225 | 278 | - | - | |
Seca5g02894 | 342 | SMART | ibrneu5 | 211 | 273 | IPR002867 | GO:0008270 | |
Seca5g02894 | 342 | SMART | ibrneu5 | 279 | 339 | IPR002867 | GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca5g02894 | Seca-Chr5 | 83015882 | 83017333 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca5g02894 | 143 | 330 | C3H Transcription Factor Family | AT2G19610 | 31.188 | 7.77e-25 | 102 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca5g02894 | K11975 | - | lang:109340029 | 291.967 |