Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02891 ATGCATAACAAGACAAAGGTAAAGAGCTCCACCATAAACTCCGTTGATCAATCCTCAAAATTCTTTTGCACTATATGCCTTGATTTCAAAACAGAACCTGAAATGTTCGGAACAAGTGGTGAGTGCAACCACTCCTTTTGCACTGAATGCATATCCATGCATGTGGCTACTCAAATACAACAAAATATTCTCAAGGTGAATTGTCCTGATCCTAACTGTTGGGTGGAATTGGAGCCCCAATATTTTCAACCAATTTTGCCTAGAGAAGTTGTTGATCGATGGGAAGCTGCAAGATTTGAGTCTTCTATTGCTTCAGGGCAAAAGACTTACTGCCCCTTTAAGGATTGCTCTGTTTTGTTGGTGAATGATGAGGGAGAAGTTGTGACCAGTTCTGAGTGTCCCTATTGTCATAGGCTATTCTATGCACAGTGTAAGGTCCCATGGCATGCAGGAATGGATTGTGAGGAATTCCAAGAGTTGCAAAGGAGTAATGGTGAAAAGGAGTTGGAGAGTAAGTTTCTGGAGTTGGCCAAAAGTGAAATGTGGCAGATATGTCCTAAATGCTCTACCTATGTCCAAAGAAGTAGTGGATGTGAACACATGAAATGCAGGTGTGGATGCAGCTTCTGCTACGTCTGTGGGAAGGTTTGGGACTATGGACATACATGCAATGAATCTCAATCTACTTGA 690 0.4203 MHNKTKVKSSTINSVDQSSKFFCTICLDFKTEPEMFGTSGECNHSFCTECISMHVATQIQQNILKVNCPDPNCWVELEPQYFQPILPREVVDRWEAARFESSIASGQKTYCPFKDCSVLLVNDEGEVVTSSECPYCHRLFYAQCKVPWHAGMDCEEFQELQRSNGEKELESKFLELAKSEMWQICPKCSTYVQRSSGCEHMKCRCGCSFCYVCGKVWDYGHTCNESQST. 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02891 229 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 11 219 IPR031127 GO:0004842|GO:0016567
Seca5g02891 229 SMART ibrneu5 167 223 IPR002867 GO:0008270
Seca5g02891 229 SMART ibrneu5 92 154 IPR002867 GO:0008270
Seca5g02891 229 Pfam IBR domain, a half RING-finger domain 176 223 IPR002867 GO:0008270
Seca5g02891 229 Pfam IBR domain, a half RING-finger domain 93 154 IPR002867 GO:0008270
Seca5g02891 229 Gene3D - 151 229 - -
Seca5g02891 229 SUPERFAMILY RING/U-box 107 159 - -
Seca5g02891 229 Pfam Zinc finger, C3HC4 type (RING finger) 23 69 IPR018957 GO:0046872
Seca5g02891 229 ProSiteProfiles TRIAD supradomain profile. 19 229 IPR044066 -
Seca5g02891 229 FunFam RBR-type E3 ubiquitin transferase 18 105 - -
Seca5g02891 229 SUPERFAMILY RING/U-box 18 101 - -
Seca5g02891 229 ProSitePatterns Zinc finger RING-type signature. 42 51 IPR017907 -
Seca5g02891 229 SUPERFAMILY RING/U-box 172 226 - -
Seca5g02891 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 106 IPR013083 -
Seca5g02891 229 CDD BRcat_RBR_unk 105 157 - -
Seca5g02891 229 ProSiteProfiles Zinc finger RING-type profile. 23 69 IPR001841 -
Seca5g02891 229 CDD Rcat_RBR_unk 181 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02891 Seca-Chr5 82986884 82987673 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02891 23 224 C3H Transcription Factor Family AT2G31760 28.986 9.50e-18 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02891 K11975 - lang:109340029 300.056