Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02889 ATGCAGAACAAGACAAAGGTAAAGAGCTCCACCATAAACTCTGTTGGTCAATCCTCAAAATGCTTTTACACCATATGCCTTGATTTCAAAATAGAACCTGAAATGTTCGGAACAAGTGGTGAGTGCAACCACTCCTTTTGCACTGAATGCATATCCATGCATGTGGCTACTCAAATACAACAAAATATTCTCAAGGTGAATTGTCCTGATCCTAACTGTTGGGTGGAATTGGAGCCCCAATATTTTCAACCAATGTTGCCTAGAGAAGTTGTTGATCGATGGGAAGCTGCAAGATTTGAGTCTTCTATTGCTTCAGGGAAAAAGACTTACTGCCCCTTTAAGGATTGCTCTGTTTTGTTGGTGAATGATGAGGGAGAAGTTGTGACCAGTTCTGAGTGTCCCTATTGTCATAGGCTATTCTGTGCACAGTGTAAGGTCCCATGGCATGCAGGAATGGATTGTGAGGAATTCCAAGAGTTGCAAAGGAGTAATGGTGAAAAGGAGTTGGAGAGTAAGTTTCTGGAGTTGGCCAAAAGTGAAATGTGGCAGATATGTCCTAAATGCTCTACCTATGTCCAAAGAAGTAGTGAATGTGAACACATGAAATGCAGGTTATATCAGTCAATGCATTTCATAATTATATCATAA 648 0.4059 MQNKTKVKSSTINSVGQSSKCFYTICLDFKIEPEMFGTSGECNHSFCTECISMHVATQIQQNILKVNCPDPNCWVELEPQYFQPMLPREVVDRWEAARFESSIASGKKTYCPFKDCSVLLVNDEGEVVTSSECPYCHRLFCAQCKVPWHAGMDCEEFQELQRSNGEKELESKFLELAKSEMWQICPKCSTYVQRSSECEHMKCRLYQSMHFIIIS. 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02889 215 Pfam Zinc finger, C3HC4 type (RING finger) 25 69 IPR018957 GO:0046872
Seca5g02889 215 ProSiteProfiles TRIAD supradomain profile. 19 215 IPR044066 -
Seca5g02889 215 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 18 206 IPR031127 GO:0004842|GO:0016567
Seca5g02889 215 Pfam IBR domain, a half RING-finger domain 93 154 IPR002867 GO:0008270
Seca5g02889 215 FunFam RBR-type E3 ubiquitin transferase 17 105 - -
Seca5g02889 215 SUPERFAMILY RING/U-box 172 203 - -
Seca5g02889 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 107 IPR013083 -
Seca5g02889 215 SUPERFAMILY RING/U-box 106 159 - -
Seca5g02889 215 Gene3D - 151 208 - -
Seca5g02889 215 ProSitePatterns Zinc finger RING-type signature. 42 51 IPR017907 -
Seca5g02889 215 SMART ibrneu5 92 154 IPR002867 GO:0008270
Seca5g02889 215 CDD BRcat_RBR_unk 105 157 - -
Seca5g02889 215 SUPERFAMILY RING/U-box 25 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02889 Seca-Chr5 82962665 82963312 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02889 25 204 C3H Transcription Factor Family AT2G19610 25.389 7.60e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02889 K11975 - lang:109340029 256.914