Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca5g02887 | ATGTCCAACTACATGCATCAAAAACATGTTCTTAACAGAACTTGGAGTTCCCATGCAGCAACTAATACAAAAAGGAGTATACCAAGTACAATGAATAGAAAATCTTACTGTGATGATTTTGATCTAGAGAAGAAGAGGAGAGCAGCAAGTGAAAGTTCTCAATCACTCCATGATCCTCACAAGGACATAACACAAATAAACAACAACCTGTTAAAGTTGATTATTTCACCCTCAATAACCTGCATTGATATTTGCTCTATATGCTTTGATTCCAAAACAGGACCTGATATGTTCAGAATAGGAAACTGCAACCATAGATTTTGCACTGACTGCATGTCCAAACATGCTGCTGCTAAAATACAGCAACATATTGTGAAGGTGAAATGTCCAAATCCAGAATGTTATGCGGAAGTGGAGCCAGAAAATTTGGAATCTGTTTTGCCTGAAGAAGTTCTTGTTCAATGGAAATCTCTAATATATGAGTATTCAATTGATTGGTGGAAAAAGATTTATTGTCCTCTTGAGAATTGCTCTGGTTTTTTGGTGAATGATGGAAAAAAAGTTGTGACTAGAGCTGAATGCCCCTCCTGTCATGGCCTATTCTGTGCCAAGTGTAAGGTTCCATGGCATGAAGGAAAGAATTGCAAGGAAATCAAGATGAAAAGGTGGAAAGTTGAAAAGGATTTGAATAAGAAGTTTCTAGATTTGGCCAAAAAAAAGATGTGGAAGAAATGTCCCAAATGTACTTTGTATGTTGAAAGACATGGTGGATGTGAACACATGAACTGCAGGGTGTGGATGTGA | 804 | 0.3731 | MSNYMHQKHVLNRTWSSHAATNTKRSIPSTMNRKSYCDDFDLEKKRRAASESSQSLHDPHKDITQINNNLLKLIISPSITCIDICSICFDSKTGPDMFRIGNCNHRFCTDCMSKHAAAKIQQHIVKVKCPNPECYAEVEPENLESVLPEEVLVQWKSLIYEYSIDWWKKIYCPLENCSGFLVNDGKKVVTRAECPSCHGLFCAKCKVPWHEGKNCKEIKMKRWKVEKDLNKKFLDLAKKKMWKKCPKCTLYVERHGGCEHMNCRVWM. | 268 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca5g02887 | 267 | ProSiteProfiles | Zinc finger RING-type profile. | 85 | 130 | IPR001841 | - | |
Seca5g02887 | 267 | ProSiteProfiles | TRIAD supradomain profile. | 81 | 267 | IPR044066 | - | |
Seca5g02887 | 267 | Pfam | Zinc finger, C3HC4 type (RING finger) | 85 | 130 | IPR018957 | GO:0046872 | |
Seca5g02887 | 267 | SUPERFAMILY | RING/U-box | 160 | 220 | - | - | |
Seca5g02887 | 267 | SUPERFAMILY | RING/U-box | 84 | 165 | - | - | |
Seca5g02887 | 267 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 45 | 263 | IPR031127 | GO:0004842|GO:0016567 | |
Seca5g02887 | 267 | ProSitePatterns | Zinc finger RING-type signature. | 103 | 112 | IPR017907 | - | |
Seca5g02887 | 267 | Gene3D | - | 213 | 265 | - | - | |
Seca5g02887 | 267 | Pfam | IBR domain, a half RING-finger domain | 164 | 215 | IPR002867 | GO:0008270 | |
Seca5g02887 | 267 | SMART | ibrneu5 | 153 | 215 | IPR002867 | GO:0008270 | |
Seca5g02887 | 267 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 82 | 166 | IPR013083 | - | |
Seca5g02887 | 267 | SUPERFAMILY | RING/U-box | 234 | 263 | - | - | |
Seca5g02887 | 267 | FunFam | RBR-type E3 ubiquitin transferase | 81 | 166 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca5g02887 | Seca-Chr5 | 82937670 | 82939288 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca5g02887 | 85 | 264 | C3H Transcription Factor Family | AT2G19610 | 28.947 | 9.14e-21 | 89.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca5g02887 | K11975 | - | mtr:25490784 | 239.965 |