Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02887 ATGTCCAACTACATGCATCAAAAACATGTTCTTAACAGAACTTGGAGTTCCCATGCAGCAACTAATACAAAAAGGAGTATACCAAGTACAATGAATAGAAAATCTTACTGTGATGATTTTGATCTAGAGAAGAAGAGGAGAGCAGCAAGTGAAAGTTCTCAATCACTCCATGATCCTCACAAGGACATAACACAAATAAACAACAACCTGTTAAAGTTGATTATTTCACCCTCAATAACCTGCATTGATATTTGCTCTATATGCTTTGATTCCAAAACAGGACCTGATATGTTCAGAATAGGAAACTGCAACCATAGATTTTGCACTGACTGCATGTCCAAACATGCTGCTGCTAAAATACAGCAACATATTGTGAAGGTGAAATGTCCAAATCCAGAATGTTATGCGGAAGTGGAGCCAGAAAATTTGGAATCTGTTTTGCCTGAAGAAGTTCTTGTTCAATGGAAATCTCTAATATATGAGTATTCAATTGATTGGTGGAAAAAGATTTATTGTCCTCTTGAGAATTGCTCTGGTTTTTTGGTGAATGATGGAAAAAAAGTTGTGACTAGAGCTGAATGCCCCTCCTGTCATGGCCTATTCTGTGCCAAGTGTAAGGTTCCATGGCATGAAGGAAAGAATTGCAAGGAAATCAAGATGAAAAGGTGGAAAGTTGAAAAGGATTTGAATAAGAAGTTTCTAGATTTGGCCAAAAAAAAGATGTGGAAGAAATGTCCCAAATGTACTTTGTATGTTGAAAGACATGGTGGATGTGAACACATGAACTGCAGGGTGTGGATGTGA 804 0.3731 MSNYMHQKHVLNRTWSSHAATNTKRSIPSTMNRKSYCDDFDLEKKRRAASESSQSLHDPHKDITQINNNLLKLIISPSITCIDICSICFDSKTGPDMFRIGNCNHRFCTDCMSKHAAAKIQQHIVKVKCPNPECYAEVEPENLESVLPEEVLVQWKSLIYEYSIDWWKKIYCPLENCSGFLVNDGKKVVTRAECPSCHGLFCAKCKVPWHEGKNCKEIKMKRWKVEKDLNKKFLDLAKKKMWKKCPKCTLYVERHGGCEHMNCRVWM. 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02887 267 ProSiteProfiles Zinc finger RING-type profile. 85 130 IPR001841 -
Seca5g02887 267 ProSiteProfiles TRIAD supradomain profile. 81 267 IPR044066 -
Seca5g02887 267 Pfam Zinc finger, C3HC4 type (RING finger) 85 130 IPR018957 GO:0046872
Seca5g02887 267 SUPERFAMILY RING/U-box 160 220 - -
Seca5g02887 267 SUPERFAMILY RING/U-box 84 165 - -
Seca5g02887 267 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 45 263 IPR031127 GO:0004842|GO:0016567
Seca5g02887 267 ProSitePatterns Zinc finger RING-type signature. 103 112 IPR017907 -
Seca5g02887 267 Gene3D - 213 265 - -
Seca5g02887 267 Pfam IBR domain, a half RING-finger domain 164 215 IPR002867 GO:0008270
Seca5g02887 267 SMART ibrneu5 153 215 IPR002867 GO:0008270
Seca5g02887 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 166 IPR013083 -
Seca5g02887 267 SUPERFAMILY RING/U-box 234 263 - -
Seca5g02887 267 FunFam RBR-type E3 ubiquitin transferase 81 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02887 Seca-Chr5 82937670 82939288 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02887 85 264 C3H Transcription Factor Family AT2G19610 28.947 9.14e-21 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02887 K11975 - mtr:25490784 239.965