LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g02886	ATGTTTTTCAAAGCAACCATACACCCTGTTGCCAACGCCCTCCAACTCATCCAACTTCTCATCAACCTAATCAAATTGGGGATAAAGTATTTTGTTGATAATTGTGATAGACACAAGAATGATCAACCCTCAAAATGCCTTTGTGCTATATGTTTCGATTTCAAACCAGCCATTAATATCTTCACAGGATGTAATTGCAATCACCCCTTTTGCACTGATTGTATATCCAAGCACGTGGCTGCTAAAATACAGCAAAACATTCTCAAGGTGAATTGTCCAAATCCAAATTGTTCTGAGGAACTAAAGCCACGAAATTTGCAAAATACTTTGCCTAAAGAGGTTATTGATCGATGGGAATCTGCAAGGTACGAGTCTTCTATTGTTGGGTGGCAAAAGAGTTATTGCCCTTTTCAGGATTGTTCTGTTTTGTTGGTGAATGATGGAGGAGAAGTTGTGACAAGTGCTGAGTGCCCTTCCTGTCACAGGCTATTTTGTGCACAGTGTAGGGTTCCTTGGCATGCAGGAATGAATTGCAAGGAATTCCAAAAGAAACTGAAAAGGGGTAAAGATGAAAAGGATTTGGATAAGAAGTTTGTGGAGTTGGCCAAACGAAACATGTGGCCCACATGTCCCAAATGCAAGATGTATGTACAGAGACAAAGTGGGTGTGAACATATGACTTGCAGGTGTGGATGCAACTTCTGTTACAAGTGTGGAAAGAGATGGAAGTTTGGACATATATGCCAAAACCCACCTCCTAATGATTACCACAAACTTAACATTAATGGAGCAAGCAGGGAATCTACCAAAACTAATAGAACAGGAGATAGCAGAACAGTTAGAAACTCACCTGGCAAATATACTGGAAGTTCTAGCTATTCATCACGAGGAAAGAAAATTTGGTAG	906	0.4018	MFFKATIHPVANALQLIQLLINLIKLGIKYFVDNCDRHKNDQPSKCLCAICFDFKPAINIFTGCNCNHPFCTDCISKHVAAKIQQNILKVNCPNPNCSEELKPRNLQNTLPKEVIDRWESARYESSIVGWQKSYCPFQDCSVLLVNDGGEVVTSAECPSCHRLFCAQCRVPWHAGMNCKEFQKKLKRGKDEKDLDKKFVELAKRNMWPTCPKCKMYVQRQSGCEHMTCRCGCNFCYKCGKRWKFGHICQNPPPNDYHKLNINGASRESTKTNRTGDSRTVRNSPGKYTGSSSYSSRGKKIW.	302

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g02886	301	ProSiteProfiles	Zinc finger RING-type profile.	48	93	IPR001841	-
	Seca5g02886	301	MobiDBLite	consensus disorder prediction	261	301	-	-
	Seca5g02886	301	SUPERFAMILY	RING/U-box	45	125	-	-
	Seca5g02886	301	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	42	129	IPR013083	-
	Seca5g02886	301	SUPERFAMILY	RING/U-box	196	249	-	-
	Seca5g02886	301	ProSitePatterns	Zinc finger RING-type signature.	66	75	IPR017907	-
	Seca5g02886	301	CDD	BRcat_RBR_unk	131	181	-	-
	Seca5g02886	301	PANTHER	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	34	256	IPR031127	GO:0004842\|GO:0016567
	Seca5g02886	301	MobiDBLite	consensus disorder prediction	259	301	-	-
	Seca5g02886	301	Gene3D	-	175	288	-	-
	Seca5g02886	301	ProSiteProfiles	TRIAD supradomain profile.	44	257	IPR044066	-
	Seca5g02886	301	SUPERFAMILY	RING/U-box	131	184	-	-
	Seca5g02886	301	SMART	ibrneu5	196	248	IPR002867	GO:0008270
	Seca5g02886	301	SMART	ibrneu5	116	178	IPR002867	GO:0008270
	Seca5g02886	301	CDD	Rcat_RBR_unk	206	242	-	-
	Seca5g02886	301	Pfam	IBR domain, a half RING-finger domain	131	178	IPR002867	GO:0008270
	Seca5g02886	301	Pfam	IBR domain, a half RING-finger domain	196	246	IPR002867	GO:0008270
	Seca5g02886	301	FunFam	RBR-type E3 ubiquitin transferase	43	129	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g02886	Seca-Chr5	82916415	82918608	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g02886	48	239	C3H Transcription Factor Family	AT2G19610	29.268	1.27e-20	89.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g02886	K11975		-	lang:109340029	308.531