Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02865 ATGGCAACCATTGCCACCTTCTTCAATAAGTTCATCTATCTTTTCATCCTTCTCATTCACCTTGGCTGCTTCATCTTCACCACCACAGGGAAACAAGATAACCGCCACTCGCCGCCTTCAAAGAAACGCAAAATCTCACCTTTATCTCAACCCTCTTCCCCTTCCCACCCCAAATTCAAAACCCACAAAGCACTTTCCTCTTCTTGGCATTTCATCAAACACCTCTTCTCCACCAAATCCTGCACAACCGCCACCACCGCCACTACCCACCCATCACCTCAATCCACCACCACCACCGCCTCCGCCACCGCAGCACATTCTCTTTCCACCGCCAGAATCTCCCAGCAATCGCTCATCTCCCTGGTACAACCCGACCCGATTCTCCCTGATCCTCCGCGTAAAAAACAACCCGGGTCGTGCCCCGAATCCGATATCTCCACCGATAACAACCTCTTCTTCCCTCTCCGCAACGACATCTTCCCCTGCACTGCGTGCGGTGAGATCTTCCAGAAGCCCCATCTCCTCGAGCAGCACCAAACCACCAGCCACGCGGTTTCCGAGCTCGTGGGATCCGACCCGGGTCACAACATAGTCCAGATCATATTCAAGTCGGGTTGGCCCGAGACCCGGGAGTTCCCCCGCCTTCACCGCATCCTGAAGATCCACAACAGCCAGAAGATCCTGTCCAAGTTCGAGGAGTATCGCGAAACGGTGAAAGCCAAGGCAGCGCGTAACATCACGCGCCGTCGTGACGAGCGGTGCATCGCCGACGGCAACGAGTTAATGCGTTTCCACTGCTCGACGTTTCTCTGTGACTTGGGACTCAACGGGGATTCTTCGATTTGTTCGCAACAATTTTGTAATATCTGTGGCATCATAAAATCAGGGTTCTCGCCCAAGTTGGATGGGATTTCCACGCTGTCAACCAGCTGGAGGGCACACGTGTCAATTCCTGAGGACATCGAGCGTGAATTCCGTTTCATGAATGTGAAGCGGGCCATGCTTGTTTGTCGGGTTATAGCGGGTCGGGTTGGATCCGATTCGGATGAGGTTGATAAAACGGATGGGGGTTTTGATTCGGTGATGGCACGTGGAGAGAGTGGAGTTTACACCCGCCTTGATGAGGAGGAGCTTTTGGTGTTTAATCCTAGGGCTGTGCTTCCATGTTTTGTTATTGTGTATAGTGTGTGA 1191 0.5281 MATIATFFNKFIYLFILLIHLGCFIFTTTGKQDNRHSPPSKKRKISPLSQPSSPSHPKFKTHKALSSSWHFIKHLFSTKSCTTATTATTHPSPQSTTTTASATAAHSLSTARISQQSLISLVQPDPILPDPPRKKQPGSCPESDISTDNNLFFPLRNDIFPCTACGEIFQKPHLLEQHQTTSHAVSELVGSDPGHNIVQIIFKSGWPETREFPRLHRILKIHNSQKILSKFEEYRETVKAKAARNITRRRDERCIADGNELMRFHCSTFLCDLGLNGDSSICSQQFCNICGIIKSGFSPKLDGISTLSTSWRAHVSIPEDIEREFRFMNVKRAMLVCRVIAGRVGSDSDEVDKTDGGFDSVMARGESGVYTRLDEEELLVFNPRAVLPCFVIVYSV. 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02865 396 MobiDBLite consensus disorder prediction 123 145 - -
Seca5g02865 396 Gene3D - 186 395 - -
Seca5g02865 396 SUPERFAMILY ADP-ribosylation 185 395 - -
Seca5g02865 396 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 67 394 - -
Seca5g02865 396 MobiDBLite consensus disorder prediction 31 60 - -
Seca5g02865 396 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 188 IPR013087 -
Seca5g02865 396 MobiDBLite consensus disorder prediction 84 103 - -
Seca5g02865 396 MobiDBLite consensus disorder prediction 43 60 - -
Seca5g02865 396 ProSitePatterns Zinc finger C2H2 type domain signature. 162 183 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02865 Seca-Chr5 82554659 82555849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02865 69 396 C2H2 Transcription Factor Family AT2G29660 53.982 1.01e-110 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca5g02865 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02865 - - gmx:100785244 607.446