Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca5g02859 | ATGCCTGCAATCGCCGCCAAGCGCAGATTAAGATCTCACGCATCGCCCCTCCCCGCTCCTTCCACGCCCAGCCGTAAATCTCCCCGCCGATGCACTGCCGCAACCCCTAATTCCTCCATTACTGAAAACATAGTTATCACCGATGGAAACAAAGCCGAATCGCTTGAACCCGCGGCAGTGAATCTCCGATGGAATCCCAAAGATGGCGAACAATTGAGGATGGTGAAGGAGGCATTGCACTTGTCCACTGCACCGTCTTCTGTTGTGTGCCGTGAGGAGGAGCAGAATGTGGTTTTGGAGTTCTGCAAGGGATGCGTTGAGCACGAGAAGGCTGGGAGTCTCTACATATGTGGCTGTCCCGGAACTGGGAAATCGTTGTCTATGGAGAAAGTGAAAGAGCTTTTGCTCAACTGGGCTACAGAGGCAGGTTTCCCGCTACCAGATGTTTTATCTGTAAATTGTACATCCCTTGCCAATACTTCTGATATTTTCACTAAGATACTTGGAGTAGACCAAACACGGGGAAAAAAGGTTTCCACCACACCCTTACAGCAACTTCAGAACATGTATTCTCACAAATCGTCTAGCAAGAACATGTTATTGATAGTAGCTGATGAATTAGATTATCTAATAACCAAAAACAGAGCTGTGCTCCATGATCTTTTCATGCTTACCACTTTCCCATTTTCCAGATGTATATTAATAGGTGTAGCAAATTCAATTGACCTAGCTGATCGATTTCTTCCAAGGCTTACATCATTAAATTGCAAGCCTATTGTTGTAACTTTCCGGGCATACACTAAAGATCAGATCCTTAGGATTCTCGAAGAAAGGCTAAATGGACTTCCTTACACTGTCTTCCAACACCAAGCGCTGGAACTATGTGCTAGGAAAGTTGCTGCAGCTTCTGGAGATATGCGAAATGCTCTTTGTATATGCAGGAGTGCAATAGAGATGCTAGAAGCTGAAATTAGAGAATCTGCCTCCAATTTGTATACTTCATTGGAAGAGAAATCATCCTCCAGGCAAAATCTTGCTACAGCTTCTGAGTTCGTAAAAAAACAAGAATTTGATATTGTAAGGATTGATCATATGGCTCTTGCCTTGTCGAAAACATATAGGTCACCTGTGGTGGATACAATACAATCCCTGCCACATCATCAACAGATTATACTCTGCTCTTCTATGAAACATTTCCGTGGAGCCAAGAAAGATGCAATCCTCGGGGAGTTGTATAAATCTTACACGGAGATATGCAAATCATCACTAATCCCCCCTGTGGGAATCTTAGAATTTTCAAACATGTGCACAGTGCTGAATGACCAGGGGCTTATCAAACTAGGACAATCCCGAGAGGATAACTTGAGAAGAGTGACACCTAAAGTAGATGAGGGTGATATTACTTTTGCATTGCAGGGAATCCGTTTTTTCCGAAACTGTCTTCAGTGA | 1449 | 0.4382 | MPAIAAKRRLRSHASPLPAPSTPSRKSPRRCTAATPNSSITENIVITDGNKAESLEPAAVNLRWNPKDGEQLRMVKEALHLSTAPSSVVCREEEQNVVLEFCKGCVEHEKAGSLYICGCPGTGKSLSMEKVKELLLNWATEAGFPLPDVLSVNCTSLANTSDIFTKILGVDQTRGKKVSTTPLQQLQNMYSHKSSSKNMLLIVADELDYLITKNRAVLHDLFMLTTFPFSRCILIGVANSIDLADRFLPRLTSLNCKPIVVTFRAYTKDQILRILEERLNGLPYTVFQHQALELCARKVAAASGDMRNALCICRSAIEMLEAEIRESASNLYTSLEEKSSSRQNLATASEFVKKQEFDIVRIDHMALALSKTYRSPVVDTIQSLPHHQQIILCSSMKHFRGAKKDAILGELYKSYTEICKSSLIPPVGILEFSNMCTVLNDQGLIKLGQSREDNLRRVTPKVDEGDITFALQGIRFFRNCLQ. | 483 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca5g02859 | 482 | SMART | Cdc6_C_2 | 392 | 471 | IPR015163 | - | |
| Seca5g02859 | 482 | FunFam | Cell division control protein | 69 | 254 | - | - | |
| Seca5g02859 | 482 | FunFam | Cell division control protein | 384 | 474 | - | - | |
| Seca5g02859 | 482 | Pfam | CDC6, C terminal winged helix domain | 392 | 470 | IPR015163 | - | |
| Seca5g02859 | 482 | Pfam | AAA domain | 109 | 226 | IPR003593 | GO:0016887 | |
| Seca5g02859 | 482 | Gene3D | - | 68 | 256 | IPR027417 | - | |
| Seca5g02859 | 482 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
| Seca5g02859 | 482 | Pfam | AAA lid domain | 288 | 322 | IPR041083 | - | |
| Seca5g02859 | 482 | CDD | AAA | 94 | 253 | - | - | |
| Seca5g02859 | 482 | Gene3D | - | 381 | 468 | IPR036388 | - | |
| Seca5g02859 | 482 | CDD | Cdc6_C | 385 | 467 | IPR015163 | - | |
| Seca5g02859 | 482 | Gene3D | - | 257 | 380 | - | - | |
| Seca5g02859 | 482 | PIRSF | Cdc6 | 5 | 482 | IPR016314 | GO:0006270|GO:0051301 | |
| Seca5g02859 | 482 | FunFam | Cell division control protein | 255 | 381 | - | - | |
| Seca5g02859 | 482 | MobiDBLite | consensus disorder prediction | 17 | 34 | - | - | |
| Seca5g02859 | 482 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 78 | 326 | IPR027417 | - | |
| Seca5g02859 | 482 | SUPERFAMILY | "Winged helix" DNA-binding domain | 377 | 480 | IPR036390 | - | |
| Seca5g02859 | 482 | PANTHER | CELL DIVISION CONTROL PROTEIN 6-RELATED | 29 | 480 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca5g02859 | Seca-Chr5 | 82273195 | 82279477 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca5g02859 | 16 | 481 | Core DNA Replication Machinery Family | AT2G29680 | 60.377 | 0.0 | 572 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca5g02859 | K02213 | - | gmx:100791200 | 788.489 |